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Protein

Nuclear transcription factor Y subunit B-10

Gene

NFYB10

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi34 – 40By similarity7

GO - Molecular functioni

  • DNA binding transcription factor activity Source: TAIR
  • protein heterodimerization activity Source: InterPro
  • sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • glucosinolate metabolic process Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Nuclear transcription factor Y subunit B-10
Short name:
AtNF-YB-10
Gene namesi
Name:NFYB10
Ordered Locus Names:At3g53340
ORF Names:F4P12_40
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G53340
TAIRilocus:2083941 AT3G53340

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00002046242 – 176Nuclear transcription factor Y subunit B-10Add BLAST175

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ67XJ2

Expressioni

Tissue specificityi

Expressed in the whole plant, except roots.1 Publication

Gene expression databases

ExpressionAtlasiQ67XJ2 baseline and differential
GenevisibleiQ67XJ2 AT

Interactioni

Subunit structurei

Heterotrimeric transcription factor composed of three components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and dimerize for NF-YA association and DNA binding (By similarity).By similarity

Binary interactionsi

Show more details

GO - Molecular functioni

Protein-protein interaction databases

BioGridi9819, 10 interactors
IntActiQ67XJ2, 18 interactors
STRINGi3702.AT3G53340.1

Structurei

3D structure databases

ProteinModelPortaliQ67XJ2
SMRiQ67XJ2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni61 – 72Subunit association domain (SAD)By similarityAdd BLAST12

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi7 – 12Poly-Gly6

Sequence similaritiesi

Belongs to the NFYB/HAP3 subunit family.Curated

Phylogenomic databases

eggNOGiKOG0869 Eukaryota
COG2036 LUCA
HOGENOMiHOG000211832
InParanoidiQ67XJ2
OMAiDAISPHG
OrthoDBiEOG09360PJ1
PhylomeDBiQ67XJ2

Family and domain databases

Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR003958 CBFA_NFYB_domain
IPR009072 Histone-fold
IPR003956 Transcrpt_fac_NFYB/HAP3_CS
PfamiView protein in Pfam
PF00808 CBFD_NFYB_HMF, 1 hit
SUPFAMiSSF47113 SSF47113, 1 hit
PROSITEiView protein in PROSITE
PS00685 NFYB_HAP3, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q67XJ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAESQTGGGG GGSHESGGDQ SPRSLNVREQ DRFLPIANIS RIMKRGLPLN
60 70 80 90 100
GKIAKDAKET MQECVSEFIS FVTSEASDKC QREKRKTING DDLLWAMATL
110 120 130 140 150
GFEDYIDPLK VYLMRYREME GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP
160 170
QQGSFSQGPY GNSQGSNMMV QMPGTE
Length:176
Mass (Da):19,155
Last modified:October 11, 2004 - v1
Checksum:i7F26A068342ED485
GO

Sequence cautioni

The sequence CAB67641 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132966 Genomic DNA Translation: CAB67641.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE79070.1
CP002686 Genomic DNA Translation: ANM65605.1
AK176827 mRNA Translation: BAD44590.1
PIRiT45874
RefSeqiNP_001327562.1, NM_001339611.1
NP_190902.2, NM_115194.3
UniGeneiAt.35203

Genome annotation databases

EnsemblPlantsiAT3G53340.1; AT3G53340.1; AT3G53340
AT3G53340.5; AT3G53340.5; AT3G53340
GeneIDi824502
GrameneiAT3G53340.1; AT3G53340.1; AT3G53340
AT3G53340.5; AT3G53340.5; AT3G53340
KEGGiath:AT3G53340

Similar proteinsi

Entry informationi

Entry nameiNFYBA_ARATH
AccessioniPrimary (citable) accession number: Q67XJ2
Secondary accession number(s): Q9LFI3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: October 11, 2004
Last modified: April 25, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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