Q67KL8 (Q67KL8_SYMTH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase ECF-type sigma factor EMBL BAD41780.1

Gene names

Ordered Locus Names:

STH2795

Organism

Symbiobacterium thermophilum (strain T / IAM 14863) [Complete proteome] [HAMAP]

Taxonomic identifier

292459 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiales incertae sedis › Clostridiales Family XVIII. Incertae Sedis › Symbiobacterium › Symbiobacterium thermophilum

Protein attributes

Sequence length	188 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627
Molecular function	Sigma factor SAAS SAAS007627
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q67KL8 [UniParc]. Last modified October 11, 2004. Version 1. Checksum: 93032AA23EEC1679	FASTA	188	21,073
	10 20 30 40 50 60 MEGGKGVVEQ EWIRRAQGGD AEAFAALVRL HQDGVYGFCL RMTGRREDAL DLTSEAFLRA 70 80 90 100 110 120 YRSLAGFDVT QPFRPWLLRI AANLCRDHLR ARQQRPAPVE DAVLADLPDP APPPPGQVLA 130 140 150 160 170 180 VHDRAAVRQA VAELPEPYRT AVTLHYFNHL SYQEISEVLN IPVGTVGTHL HRAKRLLRKR LVEQEVAT

References

[1]

"Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism." Ueda K., Yamashita A., Ishikawa J., Shimada M., Watsuji T., Morimura K., Ikeda H., Hattori M., Beppu T. Nucleic Acids Res. 32:4937-4944(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: T / IAM 14863.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006840 Genomic DNA. Translation: BAD41780.1.
RefSeq	YP_076624.1. NC_006177.1.
3D structure databases
ProteinModelPortal	Q67KL8.
ModBase	Search...
Protein-protein interaction databases
STRING	292459.STH2795.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAD41780; BAD41780; STH2795.
GeneID	2981980.
KEGG	sth:STH2795.
PATRIC	23783769. VBISymThe116959_2775.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000094755.
KO	K03088.
OMA	GELASHY.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02937. sigma70-ECF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q67KL8_SYMTH

Accession

Primary (citable) accession number: Q67KL8

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2004
Last sequence update:	October 11, 2004
Last modified:	May 1, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)