Q67JV2 (RS17_SYMTH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S17

Gene names

Name:	rpsQ
Ordered Locus Names:	STH3066

Organism

Symbiobacterium thermophilum [Complete proteome] [HAMAP]

Taxonomic identifier

2734 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiales Family XVIII. Incertae Sedis › Symbiobacterium

Protein attributes

Sequence length	94 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA By similarity. HAMAP MF_01345_B
Subunit structure	Part of the 30S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein S17P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 94	94	30S ribosomal protein S17 HAMAP MF_01345_B		PRO_0000233585

Sequences

	Sequence		Length	Mass (Da)
	Q67JV2 [UniParc]. Last modified October 11, 2004. Version 1. Checksum: 47268ACF699FC1F7	FASTA	94	11,001
	10 20 30 40 50 60 MTAERNLRKT RVGVVTSDKM DKTVVVAVET LVQHPLYKKR VRRTKKFKAH DEHNQCKVGD 70 80 90 KVRIMETRPL SKEKRWRVVE IIESAPDYKS APEV

References

[1]

"Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism." Ueda K., Yamashita A., Ishikawa J., Shimada M., Watsuji T., Morimura K., Ikeda H., Hattori M., Beppu T. Nucleic Acids Res. 32:4937-4944(2004) [PubMed: 15383646] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: T / IAM 14863.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006840 Genomic DNA. Translation: BAD42048.1.
RefSeq	YP_076892.1. NC_006177.1.
3D structure databases
ProteinModelPortal	Q67JV2.
SMR	Q67JV2. Positions 8-85.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2979350.
GenomeReviews	Gene locus STH3066 in contig AP006840_GR.
KEGG	sth:STH3066.
NMPDR	fig|292459.1.peg.2938.
PATRIC	23784313. VBISymThe116959_3045.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG750455.
OMA	TIRECRP.
ProtClustDB	PRK05610.
Enzyme and pathway databases
BioCyc	STHE292459:STH3066-MONOMER.
Family and domain databases
HAMAP	MF_01345_B. Ribosomal_S17_B. [Tree]
InterPro	IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR000266. Ribosomal_S17. IPR019984. Ribosomal_S17_bac-type. IPR019979. Ribosomal_S17_CS. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K02961.
PANTHER	PTHR10744. Ribosomal_S17. 1 hit.
Pfam	PF00366. Ribosomal_S17. 1 hit. [Graphical view]
PRINTS	PR00973. RIBOSOMALS17.
ProDom	PD001295. Ribosomal_S17. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR03635. S17_bact. 1 hit.
PROSITE	PS00056. RIBOSOMAL_S17. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS17_SYMTH

Accession

Primary (citable) accession number: Q67JV2

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 2, 2006
Last sequence update:	October 11, 2004
Last modified:	January 25, 2012
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program