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Q672H9 (VP2_SVSAP) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene names
ORF Names:ORF2
OrganismSapporo virus (isolate GI/Human/Germany/pJG-Sap01) (Hu/Dresden/pJG-Sap01/DE) [Reference proteome]
Taxonomic identifier291175 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length165 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interact with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

Sequence similarities

Belongs to the vesivirus VP2 protein family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 165165Protein VP2
PRO_0000342119

Sequences

Sequence LengthMass (Da)Tools
Q672H9 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 7D6B7C5D4AB1DBC0

FASTA16517,814
        10         20         30         40         50         60 
MSWLVGALQT FGSLADVAGT VSNIVYQQRQ AAQLEKQNEL METWMNKQEA LQKSQMELTR 

        70         80         90        100        110        120 
DLSINGPAAR VQSALDAGFD EVSARRIAGS GERVIWGNLD RPIMHAGTMD SIRQTRHLDS 

       130        140        150        160 
LSHSLATFKN GTPFGKPAPP TAKSGRPQAT TAQITIGHNP GSTSV 

« Hide

References

[1]"Structural and functional characterization of sapovirus RNA-dependent RNA polymerase."
Fullerton S.W., Blaschke M., Coutard B., Gebhardt J., Gorbalenya A., Canard B., Tucker P.A., Rohayem J.
J. Virol. 81:1858-1871(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY694184 Genomic RNA. Translation: AAU09267.1.
RefSeqYP_077280.1. NC_006269.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5176813.

Family and domain databases

InterProIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamPF05752. Calici_MSP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP2_SVSAP
AccessionPrimary (citable) accession number: Q672H9
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 11, 2004
Last modified: May 29, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families