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Reviewed, UniProtKB/Swiss-Prot Q672H9 (VP2_SVSAP)

Last modified November 3, 2009. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Protein VP2
Alternative name(s):
    Minor capsid protein
Gene names
ORF Names: ORF3
OrganismSapporo virus (isolate GI/Human/Germany/pJG-Sap01) (Hu/Dresden/pJG-Sap01/DE)
Taxonomic identifier291175 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length165 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interacts with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA encoding for VP1 and VP2.

Sequence similarities

Belongs to the vesivirus VP2 protein family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-KW

host cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 165165Protein VP2
PRO_0000342119

Sequences

Sequence LengthMass (Da)Tools
Q672H9-1 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 7D6B7C5D4AB1DBC0

FASTA16517,814
        10         20         30         40         50         60 
MSWLVGALQT FGSLADVAGT VSNIVYQQRQ AAQLEKQNEL METWMNKQEA LQKSQMELTR 

        70         80         90        100        110        120 
DLSINGPAAR VQSALDAGFD EVSARRIAGS GERVIWGNLD RPIMHAGTMD SIRQTRHLDS 

       130        140        150        160 
LSHSLATFKN GTPFGKPAPP TAKSGRPQAT TAQITIGHNP GSTSV 

« Hide

References

[1]"Structural and functional characterization of sapovirus RNA-dependent RNA polymerase."
Fullerton S.W., Blaschke M., Coutard B., Gebhardt J., Gorbalenya A., Canard B., Tucker P.A., Rohayem J.
J. Virol. 81:1858-1871(2007) [PubMed: 17121797] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

AY694184 Genomic RNA. Translation: AAU09267.1.
RefSeqYP_077280.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID5176813.

Family and domain databases

InterProIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamPF05752. Calici_MSP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP2_SVSAP
AccessionPrimary (citable) accession number: Q672H9
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 11, 2004
Last modified: November 3, 2009
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectVirus (Virus annotation project)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Forthcoming format changes

Announcement of forthcoming format changes

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents