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Protein

Hemagglutinin

Gene

HA

Organism
Influenza A virus (A/equine/Kentucky/1/1992(H3N8))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.UniRule annotationSAAS annotation

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HemagglutininUniRule annotationSAAS annotation

Keywords - Biological processi

Clathrin- and caveolin-independent endocytosis of virus by hostSAAS annotation, Clathrin-mediated endocytosis of virus by hostSAAS annotation, Fusion of virus membrane with host endosomal membraneSAAS annotation, Fusion of virus membrane with host membrane, Host-virus interaction, Viral attachment to host cellSAAS annotation, Viral penetration into host cytoplasm, Virus endocytosis by host, Virus entry into host cell

Names & Taxonomyi

Protein namesi
Recommended name:
HemagglutininSAAS annotation
Gene namesi
Name:HAImported
OrganismiInfluenza A virus (A/equine/Kentucky/1/1992(H3N8))Imported
Taxonomic identifieri475490 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA negative-strand virusesOrthomyxoviridaeInfluenzavirus A

Subcellular locationi

  • Host apical cell membrane SAAS annotation; Single-pass type I membrane protein SAAS annotation
  • Virion SAAS annotation
  • Virion membrane SAAS annotation; Single-pass type I membrane protein SAAS annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei529 – 55325HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Host cell membraneSAAS annotation, Host membrane, Membrane, Viral envelope proteinUniRule annotationSAAS annotation, Virion

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Interactioni

Subunit structurei

Homotrimer of disulfide-linked HA1-HA2.UniRule annotationSAAS annotation

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili393 – 42028Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the influenza viruses hemagglutinin family.UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Family and domain databases

Gene3Di2.10.77.10. 1 hit.
3.90.20.10. 1 hit.
3.90.209.20. 1 hit.
InterProiIPR008980. Capsid_hemagglutn.
IPR013828. Hemagglutn_HA1_a/b_dom.
IPR013827. Hemagglutn_HA1_b-rbn_dom.
IPR000149. Hemagglutn_influenz_A.
IPR001364. Hemagglutn_influenz_A/B.
IPR013829. Hemagglutn_stalk.
[Graphical view]
PfamiPF00509. Hemagglutinin. 1 hit.
[Graphical view]
PRINTSiPR00330. HEMAGGLUTN1.
PR00329. HEMAGGLUTN12.
SUPFAMiSSF49818. SSF49818. 1 hit.

Sequencei

Sequence statusi: Complete.

Q67106-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTTIILILL THWVYSQNPT SGNNTATLCL GHHAVANGTL VKTITDDQIE
60 70 80 90 100
VTNATELVQS ISIGKICNNS YRVLDGRNCT LIDAMLGDPH CDVFQYENWD
110 120 130 140 150
LFIERSSAFS NCYPYDIPDY ASLRSIVASS GTLEFTAEGF TWTGVTQNGR
160 170 180 190 200
SGACKRGSAD SFFSRLNWLT KSGNSYPTLN VTMPNNKNFD KLYIWGIHHP
210 220 230 240 250
SSNNEQTKLY IQETGRVTVS TKRSQQTIIP NIGSRPWVRG QSGRISIYWT
260 270 280 290 300
IVKPGDILMI NSNGNLVAPR GYFKLRTGRS SVMRSDAPID ICVSECITPN
310 320 330 340 350
GSIPNDKPFQ NVNKVTYGKC PKYIRQNTLK LATGMRNVPE KQIRGIFGAI
360 370 380 390 400
AGFIENGWEG MVDGWYGFRY QNSEGTGQAA DLKSTQAAID QINGKLNRVI
410 420 430 440 450
ERTNEKFHQI EKEFSEVEGR IQDLEKYVED TKIDLWSYNA ELLVALENQH
460 470 480 490 500
TIDLTDAEMN KLFEKTRRQL RENAEDMGGG CFKIYHKCDN ACIGSIRNGT
510 520 530 540 550
YDHYIYRDEA LNNRFQIKGV ELKSGYKDWI LWISFAISCF LICVVLLGFI
560
MWACQKGNIR CNICI
Length:565
Mass (Da):63,770
Last modified:November 1, 1996 - v1
Checksum:i8459CC658EADC80F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L39917 Genomic RNA. Translation: AAB36979.1.
CY030149 Viral cRNA. Translation: ACA24634.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L39917 Genomic RNA. Translation: AAB36979.1.
CY030149 Viral cRNA. Translation: ACA24634.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.10.77.10. 1 hit.
3.90.20.10. 1 hit.
3.90.209.20. 1 hit.
InterProiIPR008980. Capsid_hemagglutn.
IPR013828. Hemagglutn_HA1_a/b_dom.
IPR013827. Hemagglutn_HA1_b-rbn_dom.
IPR000149. Hemagglutn_influenz_A.
IPR001364. Hemagglutn_influenz_A/B.
IPR013829. Hemagglutn_stalk.
[Graphical view]
PfamiPF00509. Hemagglutinin. 1 hit.
[Graphical view]
PRINTSiPR00330. HEMAGGLUTN1.
PR00329. HEMAGGLUTN12.
SUPFAMiSSF49818. SSF49818. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Antigenic and genetic evolution of equine H3N8 influenza A viruses."
    Daly J.M., Lai A.C., Binns M.M., Chambers T.M., Barrandeguy M., Mumford J.A.
    J. Gen. Virol. 77:661-671(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A/equine/Kentucky/1/92Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A/equine/Kentucky/1/1992Imported.
  3. The NIAID Influenza Genome Sequencing Consortium
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A/equine/Kentucky/1/1992Imported.

Entry informationi

Entry nameiQ67106_9INFA
AccessioniPrimary (citable) accession number: Q67106
Secondary accession number(s): B0VWT9
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.