Q66K89 (E4F1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 97.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Transcription factor E4F1 EC=6.3.2.- Alternative name(s): E4F transcription factor 1 Putative E3 ubiquitin-protein ligase E4F1 Transcription factor E4F p120E4F p50E4F | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 784 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May function as a transcriptional repressor. May also function as a ubiquitin ligase mediating ubiquitination of chromatin-associated TP53. Functions in cell survival and proliferation through control of the cell cycle. Functions in the p53 and pRB tumor suppressor pathways and regulates the cyclin CCNA2 transcription. Ref.1 Ref.7 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.18 Ref.20 Ref.21 Ref.22 Identified as a cellular target of the adenoviral oncoprotein E1A, it is required for both transcriptional activation and repression of viral genes. Ref.1 Ref.7 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.18 Ref.20 Ref.21 Ref.22 |
| Pathway | |
| Subunit structure | Homodimer; binds DNA as a dimer. Forms a complex with CDKN2A and TP53. Interactions with TP53, RB1, ANP32A, BMI1 and FHL2 regulate E4F1 activity. Interacts with HDAC1, HMGA2 and RASSF1. Interacts with HBV protein X. Ref.8 Ref.10 Ref.11 Ref.13 Ref.14 Ref.15 Ref.17 Ref.20 Ref.21 Ref.22 Ref.23 Ref.24 |
| Subcellular location | Nucleus › nucleoplasm. Cytoplasm. Note: A small fraction is detected in the cytoplasm. Excluded from the nucleolus where it is targeted upon CDKN2A overexpression. Localizes to the mitotic spindle during embryogenesis By similarity. Ref.13 Ref.21 |
| Tissue specificity | Ubiquitously expressed. Ref.6 |
| Developmental stage | Expressed in a variety of fetal tissues. Ref.6 |
| Induction | |
| Post-translational modification | Proteolytic cleavage produces a 50 kDa N-terminal peptide (p50E4F) which has a DNA-binding activity and activates transcription in presence of the adenoviral E1A protein. The major full length protein (p120E4F) functions as a repressor of transcription. Phosphorylated; p120E4F and p50E4F are both phosphorylated. Phosphorylation is cell cycle-dependent and differentially regulates DNA-binding activity and function of both forms. Ref.1 Ref.8 May be sumoylated by UBE2I upon interaction with CDKN2A. Ref.19 |
| Sequence similarities | Contains 9 C2H2-type zinc fingers. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| RASSF1 | Q9NS23-2 | 7 | EBI-1227043,EBI-438698 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 784 | 784 | Transcription factor E4F1 | PRO_0000324307 | |||||
Regions | |||||||||
| Zinc finger | 192 – 214 | 23 | C2H2-type 1 | ||||||
| Zinc finger | 220 – 242 | 23 | C2H2-type 2 | ||||||
| Zinc finger | 248 – 272 | 25 | C2H2-type 3; degenerate | ||||||
| Zinc finger | 435 – 457 | 23 | C2H2-type 4 | ||||||
| Zinc finger | 463 – 485 | 23 | C2H2-type 5 | ||||||
| Zinc finger | 491 – 513 | 23 | C2H2-type 6 | ||||||
| Zinc finger | 519 – 541 | 23 | C2H2-type 7 | ||||||
| Zinc finger | 547 – 569 | 23 | C2H2-type 8 | ||||||
| Zinc finger | 575 – 597 | 23 | C2H2-type 9; degenerate | ||||||
| Region | 41 – 85 | 45 | Required for ubiquitin ligase activity | ||||||
| Region | 184 – 263 | 80 | Mediates dimerization, DNA-binding, transcription repression of CCNA2 and interaction with HMGA2 | ||||||
| Region | 369 – 566 | 198 | Mediates interaction with CDKN2A | ||||||
| Region | 435 – 599 | 165 | Interaction with BMI1 | ||||||
| Region | 521 – 580 | 60 | Mediates interaction with TP53 | ||||||
| Region | 575 – 597 | 23 | Mediates interaction with RASSF1 | ||||||
Amino acid modifications | |||||||||
| Modified residue | 50 | 1 | Phosphoserine Ref.26 Ref.27 | ||||||
Natural variations | |||||||||
| Natural variant | 167 | 1 | R → H. Ref.1 Ref.2 Ref.4 Ref.5 Corresponds to variant rs26839 [ dbSNP | Ensembl ]. | VAR_060270 | |||||
| Natural variant | 355 | 1 | V → I. Corresponds to variant rs59784157 [ dbSNP | Ensembl ]. | VAR_060271 | |||||
Experimental info | |||||||||
| Mutagenesis | 194 | 1 | C → S: Increases DNA-binding; when associated with S-197. Ref.8 | ||||||
| Mutagenesis | 197 | 1 | C → S: Increases DNA-binding; when associated with S-194. Ref.8 | ||||||
| Mutagenesis | 210 | 1 | H → A: Alters DNA-binding. Ref.8 | ||||||
| Mutagenesis | 237 | 1 | R → L: Alters DNA-binding; when associated with N-238. Ref.8 | ||||||
| Mutagenesis | 238 | 1 | H → N: Alters DNA-binding; when associated with L-237. Ref.8 | ||||||
| Mutagenesis | 249 | 1 | K → M: Alters DNA-binding; when associated with S-250. Ref.8 | ||||||
| Mutagenesis | 250 | 1 | C → S: Alters DNA-binding; when associated with M-249. Ref.8 | ||||||
| Sequence conflict | 4 | 1 | A → E in AAD09139. Ref.1 | ||||||
| Sequence conflict | 363 – 364 | 2 | SE → RK in AAD09139. Ref.1 | ||||||
| Sequence conflict | 425 | 1 | A → V in BAF83018. Ref.2 | ||||||
| Sequence conflict | 480 – 481 | 2 | KH → TD in AAD09139. Ref.1 | ||||||
| Sequence conflict | 544 | 1 | E → D in BAF83018. Ref.2 | ||||||
| Sequence conflict | 681 – 682 | 2 | QA → PR in AAD09139. Ref.1 | ||||||
| Sequence conflict | 704 – 705 | 2 | EA → RG in AAD09139. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The adenovirus E1A-regulated transcription factor E4F is generated from the human homolog of nuclear factor phiAP3." Fernandes E.R., Rooney R.J. Mol. Cell. Biol. 17:1890-1903(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, PROTEOLYTIC PROCESSING, PHOSPHORYLATION, DNA-BINDING, VARIANT HIS-167. Tissue: Cervix carcinoma. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT HIS-167. Tissue: Tongue. |
| [3] | "The sequence and analysis of duplication-rich human chromosome 16." Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A., Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J. Pennacchio L.A.Nature 432:988-994(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT HIS-167. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT HIS-167. Tissue: Uterus. |
| [6] | "Chromosomal location and tissue expression of the gene encoding the adenovirus E1A-regulated transcription factor E4F in humans and mice." Rooney R.J., Daniels R.R., Jenkins N.A., Gilbert D.J., Rothammer K., Morris S.W., Higgs D.R., Copeland N.G. Mamm. Genome 9:320-323(1998) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE. |
| [7] | "Adenovirus E1A-regulated transcription factor p120E4F inhibits cell growth and induces the stabilization of the cdk inhibitor p21WAF1." Fernandes E.R., Zhang J.Y., Rooney R.J. Mol. Cell. Biol. 18:459-467(1998) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [8] | "Mutational analysis of p50E4F suggests that DNA binding activity is mediated through an alternative structure in a zinc finger domain that is regulated by phosphorylation." Rooney R.J., Rothammer K., Fernandes E.R. Nucleic Acids Res. 26:1681-1688(1998) [PubMed] [Europe PMC] [Abstract] Cited for: OLIGOMERIZATION, PHOSPHORYLATION, DNA-BINDING, MUTAGENESIS OF CYS-194; CYS-197; HIS-210; ARG-237; HIS-238; LYS-249 AND CYS-250. |
| [9] | "Suppression of E1A-mediated transformation by the p50E4F transcription factor." Fernandes E.R., Rooney R.J. Mol. Cell. Biol. 19:4739-4749(1999) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [10] | "p53 is involved in the p120E4F-mediated growth arrest." Sandy P., Gostissa M., Fogal V., Cecco L.D., Szalay K., Rooney R.J., Schneider C., Del Sal G. Oncogene 19:188-199(2000) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH TP53. |
| [11] | "pRB binds to and modulates the transrepressing activity of the E1A-regulated transcription factor p120E4F." Fajas L., Paul C., Zugasti O., Le Cam L., Polanowska J., Fabbrizio E., Medema R., Vignais M.-L., Sardet C. Proc. Natl. Acad. Sci. U.S.A. 97:7738-7743(2000) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, REGULATION BY RB1, INTERACTION WITH RB1. |
| [12] | "Cyclin A is a mediator of p120E4F-dependent cell cycle arrest in G1." Fajas L., Paul C., Vie A., Estrach S., Medema R., Blanchard J.M., Sardet C., Vignais M.-L. Mol. Cell. Biol. 21:2956-2966(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [13] | "Association of p14ARF with the p120E4F transcriptional repressor enhances cell cycle inhibition." Rizos H., Diefenbach E., Badhwar P., Woodruff S., Becker T.M., Rooney R.J., Kefford R.F. J. Biol. Chem. 278:4981-4989(2003) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, IDENTIFICATION IN A COMPLEX WITH CDKN2A AND TP53, SUBCELLULAR LOCATION. |
| [14] | "Transcriptional activation of the cyclin A gene by the architectural transcription factor HMGA2." Tessari M.A., Gostissa M., Altamura S., Sgarra R., Rustighi A., Salvagno C., Caretti G., Imbriano C., Mantovani R., Del Sal G., Giancotti V., Manfioletti G. Mol. Cell. Biol. 23:9104-9116(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HMGA2. |
| [15] | "Modulation of p120E4F transcriptional activity by the Gam1 adenoviral early protein." Colombo R., Draetta G.F., Chiocca S. Oncogene 22:2541-2547(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HDAC1. |
| [16] | "E4F1, a novel estrogen-responsive gene in possible atheroprotection, revealed by microarray analysis." Nakamura Y., Igarashi K., Suzuki T., Kanno J., Inoue T., Tazawa C., Saruta M., Ando T., Moriyama N., Furukawa T., Ono M., Moriya T., Ito K., Saito H., Ishibashi T., Takahashi S., Yamada S., Sasano H. Am. J. Pathol. 165:2019-2031(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INDUCTION BY ESTROGEN. |
| [17] | "Identification of the E1A-regulated transcription factor p120 E4F as an interacting partner of the RASSF1A candidate tumor suppressor gene." Fenton S.L., Dallol A., Agathanggelou A., Hesson L., Ahmed-Choudhury J., Baksh S., Sardet C., Dammann R., Minna J.D., Downward J., Maher E.R., Latif F. Cancer Res. 64:102-107(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RASSF1. |
| [18] | "Transcriptional regulation of cyclin A2 by RASSF1A through the enhanced binding of p120E4F to the cyclin A2 promoter." Ahmed-Choudhury J., Agathanggelou A., Fenton S.L., Ricketts C., Clark G.J., Maher E.R., Latif F. Cancer Res. 65:2690-2697(2005) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [19] | "p14ARF interacts with the SUMO-conjugating enzyme Ubc9 and promotes the sumoylation of its binding partners." Rizos H., Woodruff S., Kefford R.F. Cell Cycle 4:597-603(2005) [PubMed] [Europe PMC] [Abstract] Cited for: SUMOYLATION. |
| [20] | "E4F1 is an atypical ubiquitin ligase that modulates p53 effector functions independently of degradation." Le Cam L., Linares L.K., Paul C., Julien E., Lacroix M., Hatchi E., Triboulet R., Bossis G., Shmueli A., Rodriguez M.S., Coux O., Sardet C. Cell 127:775-788(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, CATALYTIC ACTIVITY, INTERACTION WITH TP53. |
| [21] | "E4F1: a novel candidate factor for mediating BMI1 function in primitive hematopoietic cells." Chagraoui J., Niessen S.L., Lessard J., Girard S., Coulombe P., Sauvageau M., Meloche S., Sauvageau G. Genes Dev. 20:2110-2120(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH BMI1, SUBCELLULAR LOCATION. |
| [22] | "The LIM-only protein FHL2 is a negative regulator of E4F1." Paul C., Lacroix M., Iankova I., Julien E., Schaefer B.W., Labalette C., Wei Y., Le Cam A., Le Cam L., Sardet C. Oncogene 25:5475-5484(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH FHL2. |
| [23] | "Interaction of the hepatitis B virus protein HBx with the human transcription regulatory protein p120E4F in vitro." Rui E., Moura P.R., Goncalves K.A., Rooney R.J., Kobarg J. Virus Res. 115:31-42(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HBV PROTEIN X. |
| [24] | "The role of LANP and ataxin 1 in E4F-mediated transcriptional repression." Cvetanovic M., Rooney R.J., Garcia J.J., Toporovskaya N., Zoghbi H.Y., Opal P. EMBO Rep. 8:671-677(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH ANP32A. |
| [25] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [26] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-50, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [27] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-50, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U87269 mRNA. Translation: AAD09139.1. AK290329 mRNA. Translation: BAF83018.1. AC009065 Genomic DNA. No translation available. CH471112 Genomic DNA. Translation: EAW85532.1. BC080524 mRNA. Translation: AAH80524.1. |
| IPI | IPI00184135. |
| RefSeq | NP_004415.2. NM_004424.3. |
| UniGene | Hs.513268. Hs.615283. |
3D structure databases | |
| HSSP | HSSP built from PDB template 3ZNF based on UniProtKB P15822. |
| ProteinModelPortal | Q66K89. |
| SMR | Q66K89. Positions 192-269, 433-599. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q66K89. 1 interaction. |
| MINT | MINT-137139. |
| STRING | 9606.ENSP00000301727. |
PTM databases | |
| PhosphoSite | Q66K89. |
Polymorphism databases | |
| DMDM | 296434488. |
Proteomic databases | |
| PaxDb | Q66K89. |
| PRIDE | Q66K89. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000301727; ENSP00000301727; ENSG00000167967. |
| GeneID | 1877. |
| KEGG | hsa:1877. |
| UCSC | uc002cpm.3. human. |
Organism-specific databases | |
| CTD | 1877. |
| GeneCards | GC16P002276. |
| HGNC | HGNC:3121. E4F1. |
| MIM | 603022. gene. |
| neXtProt | NX_Q66K89. |
| PharmGKB | PA27579. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG5048. |
| HOGENOM | HOG000168447. |
| HOVERGEN | HBG052707. |
| InParanoid | Q66K89. |
| OMA | RERRFRC. |
| OrthoDB | EOG4PZJ8D. |
| PhylomeDB | Q66K89. |
Enzyme and pathway databases | |
| UniPathway | UPA00143. |
Gene expression databases | |
| ArrayExpress | Q66K89. |
| Bgee | Q66K89. |
| CleanEx | HS_E4F1. |
| Genevestigator | Q66K89. |
Family and domain databases | |
| Gene3D | 3.30.160.60. 9 hits. |
| InterPro | IPR007087. Znf_C2H2. IPR015880. Znf_C2H2-like. IPR013087. Znf_C2H2/integrase_DNA-bd. [Graphical view] |
| SMART | SM00355. ZnF_C2H2. 10 hits. [Graphical view] |
| PROSITE | PS00028. ZINC_FINGER_C2H2_1. 7 hits. PS50157. ZINC_FINGER_C2H2_2. 9 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 1877. |
| NextBio | 7679. |
| SOURCE | Search... |
Entry information
| Entry name | E4F1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q66K89 Secondary accession number(s): A8K2R4, O00146 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 16 Human chromosome 16: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with
