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Protein
Submitted name:

Tnrc6b protein

Gene

Tnrc6b

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Tnrc6b proteinImported
Gene namesi
Name:Tnrc6bImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2443730. Tnrc6b.

PTM / Processingi

Proteomic databases

PaxDbiQ66JU9.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000064336.

Structurei

3D structure databases

ProteinModelPortaliQ66JU9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 124123TNRC6-PABC_bdgInterPro annotationAdd
BLAST
Domaini129 – 19264RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410IET2. Eukaryota.
ENOG410YDKH. LUCA.
HOVERGENiHBG073539.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR032226. TNRC6_PABC-bd.
IPR033500. TNRC6B.
[Graphical view]
PANTHERiPTHR13020:SF32. PTHR13020:SF32. 1 hit.
PfamiPF00076. RRM_1. 1 hit.
PF16608. TNRC6-PABC_bdg. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q66JU9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
VRDNTTGSNS SLNTSLPSPG AWPYSASDNS FTNVHSTSAK FPDYKSTWSP
60 70 80 90 100
DPIGHNPTHL SNKMWKNHIS SRNTTPLTRP PPGLTNPKPA SPWSSTAPRS
110 120 130 140 150
VRGWGTQDSR IASASTWSDG GSVRPSYWLV LHNLTPQIDG STLRTICMQH
160 170 180 190 200
GPLLTFHLNL TQGTALIRYS TKQEAAKAQT ALHMCVLGNT TILAEFATED
210 220 230 240 250
EVSRFLAQAQ PPTPAATPSA PATGWQSLET SQNQADPVGP ALNLFGGSTG
260 270 280 290 300
LGQWSSSAGG SSGADLAGTS LWGPPNYSSS LWGVPTVEDP HRMGSPAPLL
310
PGDLLGGGSD SI
Length:312
Mass (Da):32,835
Last modified:October 11, 2004 - v1
Checksum:i030360CAA47C45D0
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC080750 mRNA. Translation: AAH80750.1.
UniGeneiMm.131328.
Mm.412092.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC080750 mRNA. Translation: AAH80750.1.
UniGeneiMm.131328.
Mm.412092.

3D structure databases

ProteinModelPortaliQ66JU9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000064336.

Proteomic databases

PaxDbiQ66JU9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:2443730. Tnrc6b.

Phylogenomic databases

eggNOGiENOG410IET2. Eukaryota.
ENOG410YDKH. LUCA.
HOVERGENiHBG073539.

Miscellaneous databases

ChiTaRSiTnrc6b. mouse.
SOURCEiSearch...

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR032226. TNRC6_PABC-bd.
IPR033500. TNRC6B.
[Graphical view]
PANTHERiPTHR13020:SF32. PTHR13020:SF32. 1 hit.
PfamiPF00076. RRM_1. 1 hit.
PF16608. TNRC6-PABC_bdg. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: 129Imported.
    Tissue: Mammary tumor. Brca1-/flImported.

Entry informationi

Entry nameiQ66JU9_MOUSE
AccessioniPrimary (citable) accession number: Q66JU9
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: July 6, 2016
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.