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Q66JS7

- Q66JS7_MOUSE

UniProt

Q66JS7 - Q66JS7_MOUSE

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Protein
Submitted name:

Igk protein

Gene
Igk
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Igk proteinImported
Gene namesi
Name:IgkImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

PTM / Processingi

Proteomic databases

PRIDEiQ66JS7.

Expressioni

Gene expression databases

GenevestigatoriQ66JS7.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000100200.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ACYX-ray3.00L21-235[»]
4BKLX-ray3.25B21-238[»]
ProteinModelPortaliQ66JS7.
SMRiQ66JS7. Positions 21-237.

Miscellaneous databases

EvolutionaryTraceiQ66JS7.

Family & Domainsi

Keywords - Domaini

Immunoglobulin domainSAAS annotations

Phylogenomic databases

HOGENOMiHOG000059537.
HOVERGENiHBG018013.
InParanoidiQ66JS7.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
InterProiIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR013106. Ig_V-set.
IPR003596. Ig_V-set_subgr.
[Graphical view]
PfamiPF07654. C1-set. 1 hit.
PF07686. V-set. 1 hit.
[Graphical view]
SMARTiSM00407. IGc1. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view]
PROSITEiPS50835. IG_LIKE. 2 hits.
PS00290. IG_MHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q66JS7-1 [UniParc]FASTAAdd to Basket

« Hide

METDTLLLWV LLLWVPGSTG DIVLTQSPAS LAVSLGQRAT ISCRASQSVS    50
TSTYSYMHWY QQKPGQPPKL LIKYASNLES GVPARFSGSG SGTDFTLNIH 100
PVEEEDTATY YCQHSWEIPW TFGGGTNLEI KRADAAPTVS IFPPSSEQLT 150
SGGASVVCFL NNFYPKDINV KWKIDGSERQ NGVLNSWTDQ DSKDSTYSMS 200
STLTLTKDEY ERHNSYTCEA THKTSTSPIV KSFNRNEC 238
Length:238
Mass (Da):26,317
Last modified:October 11, 2004 - v1
Checksum:iC1AF406948D76423
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC080787 mRNA. Translation: AAH80787.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC080787 mRNA. Translation: AAH80787.1 .

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1ACY X-ray 3.00 L 21-235 [» ]
4BKL X-ray 3.25 B 21-238 [» ]
ProteinModelPortali Q66JS7.
SMRi Q66JS7. Positions 21-237.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000100200.

Proteomic databases

PRIDEi Q66JS7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Phylogenomic databases

HOGENOMi HOG000059537.
HOVERGENi HBG018013.
InParanoidi Q66JS7.

Miscellaneous databases

EvolutionaryTracei Q66JS7.

Gene expression databases

Genevestigatori Q66JS7.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
InterProi IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR013106. Ig_V-set.
IPR003596. Ig_V-set_subgr.
[Graphical view ]
Pfami PF07654. C1-set. 1 hit.
PF07686. V-set. 1 hit.
[Graphical view ]
SMARTi SM00407. IGc1. 1 hit.
SM00406. IGv. 1 hit.
[Graphical view ]
PROSITEi PS50835. IG_LIKE. 2 hits.
PS00290. IG_MHC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Crystal structure of the principal neutralization site of HIV-1."
    Ghiara J.B., Stura E.A., Stanfield R.L., Profy A.T., Wilson I.A.
    Science 264:82-85(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS) OF 21-235.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/NImported.
    Tissue: ColonImported.
  3. "Epitope-specific antibody response is controlled by immunoglobulin V(H) polymorphisms."
    Raposo B., Dobritzsch D., Ge C., Ekman D., Xu B., Lindh I., Forster M., Uysal H., Nandakumar K.S., Schneider G., Holmdahl R.
    J. Exp. Med. 211:405-411(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.25 ANGSTROMS) OF 21-238.

Entry informationi

Entry nameiQ66JS7_MOUSE
AccessioniPrimary (citable) accession number: Q66JS7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: July 9, 2014
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3

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