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Q66ED7

- Q66ED7_YERPS

UniProt

Q66ED7 - Q66ED7_YERPS

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Protein

Superoxide dismutase [Cu-Zn]

Gene
sodC, YPTB0756
Organism
Yersinia pseudotuberculosis serotype I (strain IP32953)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Binds 1 copper ion per subunit By similarity.UniRule annotation
Binds 1 zinc ion per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi26 – 261Zinc 1Imported
Metal bindingi27 – 271Zinc 1Imported
Metal bindingi82 – 821Zinc 2; via pros nitrogenImported
Metal bindingi84 – 841Zinc 2; via tele nitrogenImported
Metal bindingi107 – 1071Zinc 2; via tele nitrogenImported
Metal bindingi107 – 1071Zinc 3; via pros nitrogenImported
Metal bindingi116 – 1161Zinc 3; via pros nitrogenImported
Metal bindingi125 – 1251Zinc 3; via pros nitrogenImported
Metal bindingi128 – 1281Zinc 3Imported
Metal bindingi163 – 1631Zinc 2; via tele nitrogenImported

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotationImported, ZincUniRule annotationImported

Enzyme and pathway databases

BioCyciYPSE273123:GI1M-797-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:YPTB0756Imported
OrganismiYersinia pseudotuberculosis serotype I (strain IP32953)Imported
Taxonomic identifieri273123 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000001011: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020 PredictedImportedAdd
BLAST
Chaini21 – 189169 PredictedImportedPRO_5000098466Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi273123.YPTB0756.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2WWNX-ray2.60A/B21-189[»]
2WWOX-ray2.40A/B21-189[»]
ProteinModelPortaliQ66ED7.
SMRiQ66ED7. Positions 36-189.

Miscellaneous databases

EvolutionaryTraceiQ66ED7.

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Keywords - Domaini

SignalImported

Phylogenomic databases

HOGENOMiHOG000263449.
KOiK04565.
OMAiITETPYG.
OrthoDBiEOG6K13RS.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q66ED7-1 [UniParc]FASTAAdd to Basket

« Hide

MKLSTLLLPV ILYSSATLAA NMAGMNDKAS MNDKASMTVK INESLPQGNG    50
KALGTVTVTE TAYGLLFTPH LTGLAPGIHG FHLHEKPSCA PGMKDGKAVP 100
ALAAGGHLDP NKTGVHLGPY NDKGHLGDLP GLVVNADGTA TYPVLAPRLK 150
SLSEVKQHAL MIHAGGDNYS DHPMPLGGGG ARMACGVIE 189
Length:189
Mass (Da):19,436
Last modified:October 11, 2004 - v1
Checksum:i9E996703B09163E0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX936398 Genomic DNA. Translation: CAH19996.1.
RefSeqiYP_069297.1. NC_006155.1.

Genome annotation databases

EnsemblBacteriaiCAH19996; CAH19996; YPTB0756.
GeneIDi2956620.
KEGGiyps:YPTB0756.
PATRICi18639806. VBIYerPse22266_0996.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX936398 Genomic DNA. Translation: CAH19996.1 .
RefSeqi YP_069297.1. NC_006155.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2WWN X-ray 2.60 A/B 21-189 [» ]
2WWO X-ray 2.40 A/B 21-189 [» ]
ProteinModelPortali Q66ED7.
SMRi Q66ED7. Positions 36-189.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 273123.YPTB0756.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAH19996 ; CAH19996 ; YPTB0756 .
GeneIDi 2956620.
KEGGi yps:YPTB0756.
PATRICi 18639806. VBIYerPse22266_0996.

Phylogenomic databases

HOGENOMi HOG000263449.
KOi K04565.
OMAi ITETPYG.
OrthoDBi EOG6K13RS.

Enzyme and pathway databases

BioCyci YPSE273123:GI1M-797-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q66ED7.

Family and domain databases

Gene3Di 2.60.40.200. 1 hit.
InterProi IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view ]
Pfami PF00080. Sod_Cu. 1 hit.
[Graphical view ]
SUPFAMi SSF49329. SSF49329. 1 hit.
PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IP32953.
  2. "Crystal Structure of the Yersinia Pseudotuberculosis Superoxide Dismutase (Sodc)."
    Huyet J., Naylor C.E., Titball R.W., Bullifent H., Walker N., Jones H.E., Duffied M.L., Basak A.K.
    Submitted (OCT-2009) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 21-189 IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ66ED7_YERPS
AccessioniPrimary (citable) accession number: Q66ED7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: July 9, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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