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Q66ED7 (Q66ED7_YERPS) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Superoxide dismutase [Cu-Zn] RuleBase RU000393
EC=1.15.1.1 RuleBase RU000393
Gene names
Name:sodC EMBL CAH19996.1
Ordered Locus Names:YPTB0756 EMBL CAH19996.1
OrganismYersinia pseudotuberculosis serotype I (strain IP32953) [Complete proteome] [HAMAP] EMBL CAH19996.1
Taxonomic identifier273123 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia ›

Protein attributes

Sequence length189 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000393

Catalytic activity

2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000393

Cofactor

Binds 1 copper ion per subunit By similarity. RuleBase RU000393

Binds 1 zinc ion per subunit By similarity. RuleBase RU000393

Sequence similarities

Belongs to the Cu-Zn superoxide dismutase family. RuleBase RU000393

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2020 Potential EMBL CAH19996.1
Chain21 – 189169 Potential
PRO_5000098466

Sites

Metal binding261Zinc 1
Metal binding271Zinc 1
Metal binding821Zinc 2; via pros nitrogen PDB 2WWO PDB 2WWN
Metal binding841Zinc 2; via tele nitrogen PDB 2WWO PDB 2WWN
Metal binding1071Zinc 2; via tele nitrogen PDB 2WWO PDB 2WWN
Metal binding1071Zinc 3; via pros nitrogen PDB 2WWO PDB 2WWN
Metal binding1161Zinc 3; via pros nitrogen PDB 2WWO PDB 2WWN
Metal binding1251Zinc 3; via pros nitrogen PDB 2WWO PDB 2WWN
Metal binding1281Zinc 3 PDB 2WWO PDB 2WWN
Metal binding1631Zinc 2; via tele nitrogen PDB 2WWO PDB 2WWN

Sequences

Sequence LengthMass (Da)Tools
Q66ED7 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 9E996703B09163E0

FASTA18919,436
        10         20         30         40         50         60 
MKLSTLLLPV ILYSSATLAA NMAGMNDKAS MNDKASMTVK INESLPQGNG KALGTVTVTE 

        70         80         90        100        110        120 
TAYGLLFTPH LTGLAPGIHG FHLHEKPSCA PGMKDGKAVP ALAAGGHLDP NKTGVHLGPY 

       130        140        150        160        170        180 
NDKGHLGDLP GLVVNADGTA TYPVLAPRLK SLSEVKQHAL MIHAGGDNYS DHPMPLGGGG 


ARMACGVIE

« Hide

References

« Hide 'large scale' references
[1]"Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis."
Chain P.S.G., Carniel E., Larimer F.W., Lamerdin J., Stoutland P.O., Regala W.M., Georgescu A.M., Vergez L.M., Land M.L., Motin L.V., Brubaker R.R., Fowler J., Hinnebusch B.J., Marceau M., Medigue C., Simonet M., Chenal-Francisque V., Souza B. expand/collapse author list , Dacheux D., Elliott J.M., Derbise A., Hauser L.J., Garcia E.
Proc. Natl. Acad. Sci. U.S.A. 101:13826-13831(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IP32953.
[2]"Crystal Structure of the Yersinia Pseudotuberculosis Superoxide Dismutase (Sodc)."
Huyet J., Naylor C.E., Titball R.W., Bullifent H., Walker N., Jones H.E., Duffied M.L., Basak A.K.
Submitted (OCT-2009) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 21-189 IN COMPLEX WITH ZINC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BX936398 Genomic DNA. Translation: CAH19996.1.
RefSeqYP_069297.1. NC_006155.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2WWNX-ray2.60A/B21-189[»]
2WWOX-ray2.40A/B21-189[»]
ProteinModelPortalQ66ED7.
SMRQ66ED7. Positions 36-189.
ModBaseSearch...

Protein-protein interaction databases

STRING273123.YPTB0756.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAH19996; CAH19996; YPTB0756.
GeneID2956620.
KEGGyps:YPTB0756.
PATRIC18639806. VBIYerPse22266_0996.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000263449.
KOK04565.
OMADKAGMND.
ProtClustDBCLSK889481.

Family and domain databases

Gene3D2.60.40.200. 1 hit.
InterProIPR024134. SOD_Cu/Zn_/chaperones.
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERPTHR10003. PTHR10003. 1 hit.
PfamPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMSSF49329. SOD_Cu_Zn. 1 hit.
PROSITEPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ66ED7.

Entry information

Entry nameQ66ED7_YERPS
AccessionPrimary (citable) accession number: Q66ED7
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: May 1, 2013
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info