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Protein

UPF0176 protein YPTB2488

Gene

YPTB2488

Organism
Yersinia pseudotuberculosis serotype I (strain IP32953)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei200 – 2001Cysteine persulfide intermediateUniRule annotation

Enzyme and pathway databases

BioCyciYPSE273123:GI1M-2575-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0176 protein YPTB2488UniRule annotation
Gene namesi
Ordered Locus Names:YPTB2488
OrganismiYersinia pseudotuberculosis serotype I (strain IP32953)
Taxonomic identifieri273123 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
Proteomesi
  • UP000001011 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 355355UPF0176 protein YPTB2488PRO_0000161544Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ669J6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini146 – 24095RhodaneseUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0176 family.UniRule annotation
Contains 1 rhodanese domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000034809.
KOiK07146.
OMAiCDTHVNC.
OrthoDBiEOG6ND0G7.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_00469. UPF0176.
InterProiIPR001763. Rhodanese-like_dom.
IPR022111. Rhodanese_C.
IPR020936. UPF0176.
[Graphical view]
PfamiPF00581. Rhodanese. 1 hit.
PF12368. Rhodanese_C. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q669J6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVLHNRISN EELKARMLAE TEPRTTVSFY KYFTLEDAKT FRDNLYSQFV
60 70 80 90 100
KLGVFGRVYV AKEGINAQIS VPANRYDEFK IALFASHPAL DQVRLNVAHE
110 120 130 140 150
DDGKSFWVLR LKVRERIVAD GIDDDSFDPA NIGHYLKADQ VNQMIDDPDT
160 170 180 190 200
LFVDMRNHYE YEVGHFENAI EVPSDTFREQ LPMAVDMLQH DKEKNIVMYC
210 220 230 240 250
TGGIRCEKAS AYMLHNGFKN VYHVEGGIIE YARKAKEQGL PLKFIGKNFV
260 270 280 290 300
FDERMGERIS DDVIAHCHQC GTPCDAHTNC KNDGCHLLFI QCPVCAAKFE
310 320 330 340 350
GCCSQICQEE LKLPQEEQRS RRAGRENGIK IFNKSKGLLQ ATMHIPSPEK

SADEK
Length:355
Mass (Da):40,550
Last modified:October 11, 2004 - v1
Checksum:i3F9C2BACC80A44FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX936398 Genomic DNA. Translation: CAH21726.1.
RefSeqiWP_002211854.1. NZ_CP009712.1.

Genome annotation databases

EnsemblBacteriaiCAH21726; CAH21726; YPTB2488.
KEGGiypo:BZ17_4149.
yps:YPTB2488.
PATRICi18643943. VBIYerPse22266_3029.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX936398 Genomic DNA. Translation: CAH21726.1.
RefSeqiWP_002211854.1. NZ_CP009712.1.

3D structure databases

ProteinModelPortaliQ669J6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAH21726; CAH21726; YPTB2488.
KEGGiypo:BZ17_4149.
yps:YPTB2488.
PATRICi18643943. VBIYerPse22266_3029.

Phylogenomic databases

HOGENOMiHOG000034809.
KOiK07146.
OMAiCDTHVNC.
OrthoDBiEOG6ND0G7.

Enzyme and pathway databases

BioCyciYPSE273123:GI1M-2575-MONOMER.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
HAMAPiMF_00469. UPF0176.
InterProiIPR001763. Rhodanese-like_dom.
IPR022111. Rhodanese_C.
IPR020936. UPF0176.
[Graphical view]
PfamiPF00581. Rhodanese. 1 hit.
PF12368. Rhodanese_C. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IP32953.

Entry informationi

Entry nameiY2488_YERPS
AccessioniPrimary (citable) accession number: Q669J6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: October 11, 2004
Last modified: November 11, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.