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Protein

Gag polyprotein

Gene

gag

Organism
Feline immunodeficiency virus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
Gene namesi
Name:gagImported
OrganismiFeline immunodeficiency virusImported
Taxonomic identifieri11673 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusFeline lentivirus group

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliQ66932.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini377 – 39216CCHC-typeInterPro annotationAdd
BLAST
Domaini395 – 40915CCHC-typeInterPro annotationAdd
BLAST

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q66932-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNGQGRDWK MAIKRCNNVA VGVGTKSKKF GEGNFRWAIR MANVTTGREP
60 70 80 90 100
GDIPETLDQL RSIICDLQDR REQYGSSKEI DMAITTLKVF AVAGILNMTV
110 120 130 140 150
STATAAENMY AQMGLDTRPS IKESGGKEEG PPQAYPIQTV NGAPQYVALD
160 170 180 190 200
PKMVSIFMEK AREGLGGEEV QLWFTAFSAN LTSTDMATLI MSAPGCAADK
210 220 230 240 250
EILDETLKQM TAEYDRTHPP DGPRPLPYFT AAEIMGIGLT QEQQAEPRFA
260 270 280 290 300
PARMQCRAWY LEALGKLAAI KAKSPRAVQL KQGAKEDYSS FIDRLFAQID
310 320 330 340 350
QEQNTAEVKL YLKQSLSIAN ANPDCKRAMS HLKPESTLEE KLRACQEVGS
360 370 380 390 400
PGYKMQLLAE ALTRVQTVQT KGPRPVCFNC KKPGHLARQC KEVKRCNNCG
410 420 430 440
KPGHLAVNCW KGGRKISGNE KVGRAAAPVN QVQQMVPSAP PMEEKLLDL
Length:449
Mass (Da):49,330
Last modified:November 1, 1996 - v1
Checksum:iECCE450044B2663C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U11820 Genomic DNA. Translation: AAB09309.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U11820 Genomic DNA. Translation: AAB09309.1.

3D structure databases

ProteinModelPortaliQ66932.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 2 hits.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ66932_9RETR
AccessioniPrimary (citable) accession number: Q66932
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.