ID POLG_FCVUR Reviewed; 1763 AA. AC Q66914; DT 09-NOV-2004, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1996, sequence version 1. DT 24-JAN-2024, entry version 125. DE RecName: Full=Genome polyprotein; DE Contains: DE RecName: Full=Protein p5.6; DE AltName: Full=NS1; DE Contains: DE RecName: Full=Protein p32; DE AltName: Full=NS2; DE Contains: DE RecName: Full=NTPase; DE EC=3.6.1.15; DE AltName: Full=NS3; DE AltName: Full=p39; DE Contains: DE RecName: Full=Protein p30; DE AltName: Full=NS4; DE Contains: DE RecName: Full=Viral genome-linked protein; DE AltName: Full=NS5; DE AltName: Full=VPg; DE AltName: Full=p13; DE Contains: DE RecName: Full=Protease-polymerase p76; DE Short=Pro-Pol; DE EC=2.7.7.48; DE EC=3.4.22.66; DE AltName: Full=NS6-7; GN ORFNames=ORF1; OS Feline calicivirus (strain Cat/United States/Urbana/1960) (FCV). OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Caliciviridae; Vesivirus; Feline calicivirus. OX NCBI_TaxID=292349; OH NCBI_TaxID=9685; Felis catus (Cat) (Felis silvestris catus). RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC RNA]. RX PubMed=7618275; DOI=10.1006/viro.1995.1354; RA Sosnovtsev S.V., Green K.Y.; RT "RNA transcripts derived from a cloned full-length copy of the feline RT calicivirus genome do not require VpG for infectivity."; RL Virology 210:383-390(1995). RN [2] RP PROTEIN SEQUENCE OF 686-695, PROTEOLYTIC PROCESSING (GENOME POLYPROTEIN), RP MUTAGENESIS OF GLU-46; GLU-331; GLU-683; GLU-685; GLU-960; GLU-1071; RP GLU-1345 AND GLU-1419, AND FUNCTION (PROTEASE-POLYMERASE P76). RX PubMed=12072506; DOI=10.1128/jvi.76.14.7060-7072.2002; RA Sosnovtsev S.V., Garfield M., Green K.Y.; RT "Processing map and essential cleavage sites of the nonstructural RT polyprotein encoded by ORF1 of the feline calicivirus genome."; RL J. Virol. 76:7060-7072(2002). RN [3] RP PROTEIN SEQUENCE OF 961-969 AND 1072-1080, PROTEOLYTIC PROCESSING (GENOME RP POLYPROTEIN), MUTAGENESIS OF CYS-1193, AND FUNCTION (PROTEASE-POLYMERASE RP P76). RX PubMed=10400760; DOI=10.1128/jvi.73.8.6626-6633.1999; RA Sosnovtseva S.A., Sosnovtsev S.V., Green K.Y.; RT "Mapping of the feline calicivirus proteinase responsible for autocatalytic RT processing of the nonstructural polyprotein and identification of a stable RT proteinase-polymerase precursor protein."; RL J. Virol. 73:6626-6633(1999). RN [4] RP PROTEIN SEQUENCE OF 961-980. RX PubMed=11062050; DOI=10.1006/viro.2000.0579; RA Sosnovtsev S.V., Green K.Y.; RT "Identification and genomic mapping of the ORF3 and VPg proteins in feline RT calicivirus virions."; RL Virology 277:193-203(2000). RN [5] RP FUNCTION (PROTEASE-POLYMERASE P76). RX PubMed=15254188; DOI=10.1128/jvi.78.15.8172-8182.2004; RA Kuyumcu-Martinez M., Belliot G., Sosnovtsev S.V., Chang K.O., Green K.Y., RA Lloyd R.E.; RT "Calicivirus 3C-like proteinase inhibits cellular translation by cleavage RT of poly(A)-binding protein."; RL J. Virol. 78:8172-8182(2004). RN [6] RP FUNCTION (PROTEASE-POLYMERASE P76). RX PubMed=15105529; DOI=10.1099/vir.0.19564-0; RA Willcocks M.M., Carter M.J., Roberts L.O.; RT "Cleavage of eukaryotic initiation factor eIF4G and inhibition of host-cell RT protein synthesis during feline calicivirus infection."; RL J. Gen. Virol. 85:1125-1130(2004). RN [7] RP INTERACTION WITH NTPASE (PROTEIN P32), INTERACTION WITH PROTEIN P30 RP (PROTEIN P32), INTERACTION WITH PROTEASE-POLYMERASE P76 (PROTEIN P32), RP INTERACTION WITH PROTEASE-POLYMERASE P76 (VIRAL GENOME-LINKED PROTEIN), RP INTERACTION WITH CAPSID PROTEIN VP1 (VIRAL GENOME-LINKED PROTEIN), RP INTERACTION WITH VIRAL GENOME-LINKED PROTEIN (PROTEASE-POLYMERASE P76), RP INTERACTION WITH PROTEIN P32 (PROTEASE-POLYMERASE P76), INTERACTION WITH RP CAPSID PROTEIN VP1 (PROTEASE-POLYMERASE P76), SUBUNIT (PROTEIN P32), AND RP SUBUNIT (PROTEASE-POLYMERASE P76). RX PubMed=16432023; DOI=10.1099/vir.0.81456-0; RA Kaiser W.J., Chaudhry Y., Sosnovtsev S.V., Goodfellow I.G.; RT "Analysis of protein-protein interactions in the feline calicivirus RT replication complex."; RL J. Gen. Virol. 87:363-368(2006). RN [8] RP FUNCTION (PROTEASE-POLYMERASE P76). RX PubMed=27147742; DOI=10.1128/jvi.00647-16; RA Humoud M.N., Doyle N., Royall E., Willcocks M.M., Sorgeloos F., RA van Kuppeveld F., Roberts L.O., Goodfellow I.G., Langereis M.A., Locker N.; RT "Feline Calicivirus Infection Disrupts Assembly of Cytoplasmic Stress RT Granules and Induces G3BP1 Cleavage."; RL J. Virol. 90:6489-6501(2016). CC -!- FUNCTION: [NTPase]: NTPase presumably plays a role in replication. CC Despite having similarities with helicases, does not seem to display CC any helicase activity. CC -!- FUNCTION: [Viral genome-linked protein]: Viral genome-linked protein is CC covalently linked to the 5'-end of the positive-strand, negative-strand CC genomic RNAs and subgenomic RNA. Acts as a genome-linked replication CC primer. May recruit ribosome to viral RNA thereby promoting viral CC proteins translation (By similarity). {ECO:0000250, CC ECO:0000269|PubMed:15254188}. CC -!- FUNCTION: [Protease-polymerase p76]: The protease activity processes CC the polyprotein: Pro-Pol is first released by autocleavage, then all CC other proteins are cleaved (PubMed:12072506, PubMed:10400760). Cleaves CC host translation initiation factor eIF4G1, eIF4G2 and PABP1 thereby CC inducing a shutdown of host protein synthesis (PubMed:15105529). This CC shutdown may not prevent viral mRNA from being translated since viral CC Vpg replaces the cap (PubMed:15105529). May cleave host polyadenylate- CC binding protein thereby inhibiting cellular translation CC (PubMed:15254188). Seems to act as a RNase and degrades host Pol II- CC driven mRNAs with the help of host XRN1 (By similarity). Inhibits the CC integrated stress response (ISR) in the infected cell by cleaving host CC G3BP1 and G3BP2 (PubMed:27147742). Stress granule formation is thus CC inhibited, which allows protein synthesis and viral replication CC (PubMed:27147742). The RNA-directed RNA polymerase activity replicates CC genomic and antigenomic viral RNA by recognizing specific signals. CC Transcribes also a subgenomic mRNA by initiating RNA synthesis CC internally on antigenomic RNA. This sgRNA codes for structural CC proteins. Catalyzes the covalent attachment VPg with viral RNAs. CC {ECO:0000250|UniProtKB:N0A3C0, ECO:0000269|PubMed:10400760, CC ECO:0000269|PubMed:12072506, ECO:0000269|PubMed:15105529, CC ECO:0000269|PubMed:15254188, ECO:0000269|PubMed:27147742}. CC -!- CATALYTIC ACTIVITY: [NTPase]: CC Reaction=a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'- CC diphosphate + H(+) + phosphate; Xref=Rhea:RHEA:23680, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:43474, CC ChEBI:CHEBI:57930, ChEBI:CHEBI:61557; EC=3.6.1.15; CC -!- CATALYTIC ACTIVITY: [Protease-polymerase p76]: CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA- CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395; CC EC=2.7.7.48; Evidence={ECO:0000255|PROSITE-ProRule:PRU00539}; CC -!- CATALYTIC ACTIVITY: [Protease-polymerase p76]: CC Reaction=Endopeptidase with a preference for cleavage when the P1 CC position is occupied by Glu-|-Xaa and the P1' position is occupied by CC Gly-|-Yaa.; EC=3.4.22.66; Evidence={ECO:0000255|PROSITE- CC ProRule:PRU01242}; CC -!- SUBUNIT: Protein p32: Homodimer (PubMed:16432023). Interacts with CC NTPase, protein p30 and protease-polymerase p76 (PubMed:16432023). CC {ECO:0000269|PubMed:16432023}. CC -!- SUBUNIT: [Viral genome-linked protein]: Interacts with capsid protein CC VP1 and protease-polymerase p76. {ECO:0000269|PubMed:16432023}. CC -!- SUBUNIT: [Protease-polymerase p76]: Homooligomer. Interacts with Vpg, CC protein p32 and may interact with capsid protein VP1. CC {ECO:0000269|PubMed:16432023}. CC -!- DOMAIN: [Protease-polymerase p76]: Protease-polymerase is composed of CC two domains displaying two different catalytic activity. These CC activities may act independently. CC -!- PTM: [Genome polyprotein]: Specific enzymatic cleavages in vivo yield CC mature proteins. Pro-Pol is first autocatalytically cleaved, then CC processes the whole polyprotein. {ECO:0000269|PubMed:10400760, CC ECO:0000269|PubMed:12072506}. CC -!- PTM: [Viral genome-linked protein]: VPg is uridylylated by the CC polymerase and is covalently attached to the 5'-end of the CC polyadenylated genomic and subgenomic RNAs. This uridylylated form acts CC as a nucleotide-peptide primer for the polymerase (By similarity). CC {ECO:0000250}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; L40021; AAA79323.1; -; Genomic_RNA. DR RefSeq; NP_783196.1; NC_001481.2. DR SMR; Q66914; -. DR MEROPS; C24.002; -. DR GeneID; 1502252; -. DR KEGG; vg:1502252; -. DR BRENDA; 3.4.22.66; 8732. DR BRENDA; 3.4.23.B4; 8732. DR Proteomes; UP000001098; Segment. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro. DR GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro. DR GO; GO:0003968; F:RNA-dependent RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro. DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW. DR GO; GO:0039657; P:suppression by virus of host gene expression; IEA:UniProtKB-KW. DR GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro. DR CDD; cd00009; AAA; 1. DR CDD; cd23192; Caliciviridae_RdRp; 1. DR Gene3D; 1.10.260.110; -; 1. DR Gene3D; 1.20.960.20; -; 1. DR Gene3D; 3.30.70.270; -; 1. DR Gene3D; 6.10.140.320; -; 1. DR Gene3D; 6.10.250.3230; -; 1. DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR043502; DNA/RNA_pol_sf. DR InterPro; IPR004004; Helic/Pol/Pept_Calicivir-typ. DR InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir. DR InterPro; IPR014759; Helicase_SF3_ssRNA_vir. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR000317; Peptidase_C24. DR InterPro; IPR009003; Peptidase_S1_PA. DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase. DR InterPro; IPR001205; RNA-dir_pol_C. DR InterPro; IPR007094; RNA-dir_pol_PSvirus. DR InterPro; IPR049434; VPg. DR Pfam; PF03510; Peptidase_C24; 1. DR Pfam; PF00680; RdRP_1; 1. DR Pfam; PF00910; RNA_helicase; 1. DR Pfam; PF20915; VPg; 1. DR PRINTS; PR00916; 2CENDOPTASE. DR PRINTS; PR00918; CALICVIRUSNS. DR SMART; SM00382; AAA; 1. DR SUPFAM; SSF56672; DNA/RNA polymerases; 1. DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1. DR SUPFAM; SSF50494; Trypsin-like serine proteases; 1. DR PROSITE; PS51894; CV_3CL_PRO; 1. DR PROSITE; PS50507; RDRP_SSRNA_POS; 1. DR PROSITE; PS51218; SF3_HELICASE_2; 1. PE 1: Evidence at protein level; KW ATP-binding; Covalent protein-RNA linkage; Direct protein sequencing; KW Eukaryotic host gene expression shutoff by virus; KW Eukaryotic host translation shutoff by virus; KW Host gene expression shutoff by virus; Host-virus interaction; Hydrolase; KW Nucleotide-binding; Nucleotidyltransferase; Phosphoprotein; Protease; KW Reference proteome; RNA-directed RNA polymerase; Thiol protease; KW Transferase; Viral RNA replication. FT CHAIN 1..1763 FT /note="Genome polyprotein" FT /id="PRO_0000341636" FT CHAIN 1..46 FT /note="Protein p5.6" FT /id="PRO_0000036907" FT CHAIN 47..331 FT /note="Protein p32" FT /id="PRO_0000036908" FT CHAIN 332..685 FT /note="NTPase" FT /id="PRO_0000036909" FT CHAIN 686..960 FT /note="Protein p30" FT /id="PRO_0000036910" FT CHAIN 961..1071 FT /note="Viral genome-linked protein" FT /id="PRO_0000036911" FT CHAIN 1072..1763 FT /note="Protease-polymerase p76" FT /id="PRO_0000036912" FT DOMAIN 458..614 FT /note="SF3 helicase" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00551" FT DOMAIN 1073..1229 FT /note="Peptidase C24" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01242" FT DOMAIN 1478..1603 FT /note="RdRp catalytic" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00539" FT ACT_SITE 1110 FT /note="For 3CLpro activity" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01242" FT ACT_SITE 1131 FT /note="For 3CLpro activity" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01242" FT ACT_SITE 1193 FT /note="For 3CLpro activity" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01242" FT BINDING 484..491 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00551" FT SITE 46..47 FT /note="Cleavage; by Pro-Pol" FT /evidence="ECO:0000269|PubMed:12072506" FT SITE 331..332 FT /note="Cleavage; by Pro-Pol" FT /evidence="ECO:0000269|PubMed:12072506" FT SITE 685..686 FT /note="Cleavage; by Pro-Pol" FT /evidence="ECO:0000269|PubMed:10400760, FT ECO:0000269|PubMed:12072506" FT SITE 960..961 FT /note="Cleavage; by Pro-Pol" FT /evidence="ECO:0000269|PubMed:10400760, FT ECO:0000269|PubMed:12072506" FT SITE 1071..1072 FT /note="Cleavage; by Pro-Pol" FT /evidence="ECO:0000269|PubMed:10400760, FT ECO:0000269|PubMed:12072506" FT MOD_RES 984 FT /note="O-(5'-phospho-RNA)-tyrosine" FT /evidence="ECO:0000250|UniProtKB:P27409" FT MUTAGEN 46 FT /note="E->A: Complete loss of proteolytic processing FT between P5.6 and P32; Complete loss of infectious clone FT recovery." FT /evidence="ECO:0000269|PubMed:12072506" FT MUTAGEN 331 FT /note="E->A: Complete loss of infectious clone recovery." FT /evidence="ECO:0000269|PubMed:12072506" FT MUTAGEN 683 FT /note="E->A: Complete loss of infectious clone recovery." FT /evidence="ECO:0000269|PubMed:12072506" FT MUTAGEN 685 FT /note="E->A: Complete loss of infectious clone recovery." FT /evidence="ECO:0000269|PubMed:12072506" FT MUTAGEN 960 FT /note="E->A: Complete loss of infectious clone recovery." FT /evidence="ECO:0000269|PubMed:12072506" FT MUTAGEN 1071 FT /note="E->A: Complete loss of infectious clone recovery." FT /evidence="ECO:0000269|PubMed:12072506" FT MUTAGEN 1193 FT /note="C->G: Complete loss of proteolytic processing." FT /evidence="ECO:0000269|PubMed:10400760" FT MUTAGEN 1345 FT /note="E->A: No effect on infectious clone recovery." FT /evidence="ECO:0000269|PubMed:12072506" FT MUTAGEN 1419 FT /note="E->A: No effect on infectious clone recovery." FT /evidence="ECO:0000269|PubMed:12072506" SQ SEQUENCE 1763 AA; 194911 MW; 7F105592DF0BF821 CRC64; MSQTLSFVLK THSVRKDFVH SVKRTLQRRR DLQYLYNKLS RPIRAEACPS CASYDVCPNC TSGSIPDDGS SKGQIPSWED VTKTSTYSLL LSEDTSDELH PDDLVNVAAH IRKALSTQSH PANVDMCKEQ LTSLLVMAEA MLPQRSRSTL PLHQKYVAAR LEWREKFFSK PLDFLLEKIG TSRDILQITA VWKIIIEKAC YCKSYGEHWF EAAKQKLREI KSYEHNTLKP LIGAFIDGLR LMTIDNPNPM GFLPKLIGLI KPLNLAMIID NHENTLSGWV ITLTAIMELY NITECTIDVI TSIITGFYDK IGKATKFYSQ IKALFTGFRS EDVANSFWYM AAAILCYLIT GLIPNNGRLS KIKACLAGAT TLVSGIVATQ KLAAMFATWN SESIVNELSA RTVAISELNN PTTTSDTDSV ERLLELAKIL HEEIKIHTLN PIMQSYNPIL RNLMSTLDGV ITSCNKRKAI AKKRPVPVCY ILTGPPGCGK TTAALALAKK LSDQEPSVIN LDVDHHDTYT GNEVCIVDEF DSSDKVDYAN FVIGMVNSAP MVLNCDMLEN KGKLFTSKYI IMTSNSETPV KPSSRRAGAF YRRVTIIDVA NPLAESHKRA RPGTSVPRSC YKKNFSHLSL AKRGAECWCK EYVLDPKGLQ HQSIKAPPPT FLNIDSLAQT MKQDFTLKNM AFEAENGHSE HRYGFVCQQG EVETVRRLLN AVRTRLNATF TVCVGSEASS SIGCTAHVLT PDEPFNGKKY VVSRCNEASL SALEGNCVQS ALGVCMSTKD LTHLCHFIRG KIVNDSVRLD ELPANQHVVT VNSVFDLAWA LRRHLTLAGQ FQAIRAAYDV LTAPDKVPAM LRHWMDETSF SDEHVVTQFV TPGGIVILES CGGARIWALG HNVIRAGGVT ATPTGGCIRF MGLSAQTMPW SEIFRELFSL LGRIWSSIKV STLVLTALGM YASRFRPKSE AKGKTKSKVG PYRGRGVALT DDEYDEWREH NATRKLDLSV EDFLMLRHRA ALGADDADAV KFRSWWNSRS RLADDYEDVT VIGKGGVKHE KIRTNTLRAV DRGYDVSFAE ESGPGTKFHK NAIGSVTDVC GEHKGYCVHM GHGVYATVAH VAKGDSFFLG ERIFDLKTNG EFCCFRSTKI LPSAAPFFPG KPTRDPWGSP VATEWKPKPY TTTSGKIVGC FATTSTETHP GDCGLPYIDD NGRVTGLHTG SGGPKTPSAK LVVPYVHIDM KTKSVTAQKY DVTKPDISYK GLICKQLDEI RIIPKGTRLH VSPAHTEDFE ECSHQPASLG SGDPRCPKSL TAIVVDSLKP YCDKVEGPPH DILHRVQKML IDHLSGFVPV NISSETSMLS AFHKLNHDTS CGPYLGGRKK DHMTNGEPDK PLLDLLSAKW KLATQGIALP HEYTIGLKDE LRPVEKVAEG KRRMIWGCDV GVATVCAAAF KGVSDAITAN HQYGPVQVGI NMDSPSVEAL HQRIKSAAKV YAVDYSKWDS TQSPRVSAAS IDILRYFSDR SPIVDSAANT LKSPPIAIFN GVAVKVSSGL PSGMPLTSVI NSLNHCLYVG CAILQSLEAR GVPVTWNLFS TFDMMTYGDD GVYMFPMMFA SVSDQIFANL SAYGLKPTRV DKSVGSIEPI DPESVVFLKR TITRTPQGIR GLLDRSSIIR QFYYIKGENS DDWKTPPKSI DPTSRGQQLW NACLYASQHG VEFYNKIYKL AQKAVEYEEL HLEPPTYHSA LEHYNNQFNG VEARSDQIDS SGMTALHCDV FEV //