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Protein

Small capsomere-interacting protein

Gene

SCP

Organism
Equine herpesvirus 2 (strain 86/87) (EHV-2)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Participates in the assembly of the infectious particles by decorating the outer surface of the capsid shell and thus forming a layer between the capsid and the tegument. Complexes composed of the major capsid protein and small capsomere-interacting protein/SCP assemble together in the host cytoplasm and are translocated to the nucleus, where they accumulate and participate in capsid assembly.UniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Small capsomere-interacting proteinUniRule annotation
Gene namesi
Name:SCPUniRule annotation
Ordered Locus Names:65
OrganismiEquine herpesvirus 2 (strain 86/87) (EHV-2)
Taxonomic identifieri82831 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageHerpesviralesHerpesviridaeGammaherpesvirinaePercavirus
Virus hostiEquus caballus (Horse) [TaxID: 9796]
Proteomesi
  • UP000007083 Componenti: Genome

Subcellular locationi

Q66667:
  • Virion UniRule annotation
  • Host nucleus UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Host nucleus, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004060751 – 179Small capsomere-interacting proteinAdd BLAST179

Interactioni

Subunit structurei

Interacts with the major capsid protein/MCP.UniRule annotation

Structurei

3D structure databases

SMRiQ66667.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi122 – 168Ser-richAdd BLAST47

Sequence similaritiesi

Belongs to the herpesviridae small capsomere-interacting protein family.UniRule annotation

Phylogenomic databases

OrthoDBiVOG090001VI.

Family and domain databases

HAMAPiMF_04022. HSV_SCP_gammahv. 1 hit.
InterProiView protein in InterPro
IPR009299. Herpes_capsid.
PfamiView protein in Pfam
PF06112. Herpes_capsid. 1 hit.

Sequencei

Sequence statusi: Complete.

Q66667-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRDEMEACE LGDGEGYQPL RLPRVQGKLE EINPIVAAEV AALERRDRSD
60 70 80 90 100
ADYEKVKMLY VIYLRVHEIY DDQARIRLGV RRKKHLGDLT ASRGAGLRSF
110 120 130 140 150
EALSSMIPLP PETGEFDTGG TSSSVRSASG ASGGAASTAA SGGSASAAAS
160 170
GASGGSASQS DVSSRSRSQQ APGTKGKKQ
Length:179
Mass (Da):18,744
Last modified:November 1, 1996 - v1
Checksum:iEAA1411976927B06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U20824 Genomic DNA. Translation: AAC13853.1.
PIRiS55660.
RefSeqiNP_042662.1. NC_001650.2.

Genome annotation databases

GeneIDi1461020.
KEGGivg:1461020.

Similar proteinsi

Entry informationi

Entry nameiSCP_EHV2
AccessioniPrimary (citable) accession number: Q66667
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 8, 2011
Last sequence update: November 1, 1996
Last modified: April 12, 2017
This is version 47 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families