##gff-version 3 Q66577 UniProtKB Initiator methionine 1 1 . . . Note=Removed%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Chain 2 2203 . . . ID=PRO_0000426401;Note=Genome polyprotein Q66577 UniProtKB Chain 2 869 . . . ID=PRO_0000426402;Note=P1 Q66577 UniProtKB Chain 2 330 . . . ID=PRO_0000426403;Note=Capsid protein VP0 Q66577 UniProtKB Chain 2 69 . . . ID=PRO_0000426404;Note=Capsid protein VP4 Q66577 UniProtKB Chain 70 330 . . . ID=PRO_0000426405;Note=Capsid protein VP2 Q66577 UniProtKB Chain 331 569 . . . ID=PRO_0000426406;Note=Capsid protein VP3 Q66577 UniProtKB Chain 570 869 . . . ID=PRO_0000426407;Note=Capsid protein VP1 Q66577 UniProtKB Chain 870 1447 . . . ID=PRO_0000426408;Note=P2 Q66577 UniProtKB Chain 870 1019 . . . ID=PRO_0000426409;Note=Protease 2A Q66577 UniProtKB Chain 1020 1118 . . . ID=PRO_0000039686;Note=Protein 2B Q66577 UniProtKB Chain 1119 1447 . . . ID=PRO_0000039687;Note=Protein 2C Q66577 UniProtKB Chain 1448 2203 . . . ID=PRO_0000426410;Note=P3 Q66577 UniProtKB Chain 1448 1558 . . . ID=PRO_0000426411;Note=Protein 3AB Q66577 UniProtKB Chain 1448 1536 . . . ID=PRO_0000039688;Note=Protein 3A Q66577 UniProtKB Chain 1537 1558 . . . ID=PRO_0000426412;Note=Viral protein genome-linked Q66577 UniProtKB Chain 1559 2203 . . . ID=PRO_0000426413;Note=Protein 3CD Q66577 UniProtKB Chain 1559 1741 . . . ID=PRO_0000426414;Note=Protease 3C Q66577 UniProtKB Chain 1742 2203 . . . ID=PRO_0000426415;Note=RNA-directed RNA polymerase Q66577 UniProtKB Topological domain 2 1513 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q66577 UniProtKB Intramembrane 1514 1529 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255 Q66577 UniProtKB Topological domain 1530 2203 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q66577 UniProtKB Domain 1223 1379 . . . Note=SF3 helicase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00551 Q66577 UniProtKB Domain 1559 1737 . . . Note=Peptidase C3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q66577 UniProtKB Domain 1968 2084 . . . Note=RdRp catalytic;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00539 Q66577 UniProtKB Zinc finger 1387 1404 . . . Note=C4-type%3B degenerate;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q66577 UniProtKB Region 567 583 . . . Note=Amphipathic alpha-helix;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q66577 UniProtKB Region 1119 1257 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Region 1119 1191 . . . Note=Membrane-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Region 1140 1144 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Region 1431 1438 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Region 1442 1447 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Active site 890 890 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Active site 908 908 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Active site 979 979 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Active site 1598 1598 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q66577 UniProtKB Active site 1629 1629 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q66577 UniProtKB Active site 1705 1705 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q66577 UniProtKB Binding site 925 925 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q66577 UniProtKB Binding site 927 927 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q66577 UniProtKB Binding site 985 985 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q66577 UniProtKB Binding site 987 987 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q66577 UniProtKB Binding site 1387 1387 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q66577 UniProtKB Binding site 1399 1399 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q66577 UniProtKB Binding site 1404 1404 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q66577 UniProtKB Binding site 1974 1974 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Binding site 1974 1974 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Binding site 2070 2070 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Binding site 2070 2070 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Site 69 70 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Site 330 331 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Site 869 870 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Site 1019 1020 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Site 1118 1119 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Site 1143 1143 . . . Note=Involved in the interaction with host RTN3;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q66478 Q66577 UniProtKB Site 1447 1448 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Site 1536 1537 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Site 1558 1559 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Site 1741 1742 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q66577 UniProtKB Modified residue 1539 1539 . . . Note=O-(5'-phospho-RNA)-tyrosine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q66577 UniProtKB Lipidation 2 2 . . . Note=N-myristoyl glycine%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300