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Protein
Submitted name:

YscD putative type III secretion protein

Gene

pYV0080

Organism
Yersinia pseudotuberculosis serotype I (strain IP32953)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciYPSE273123:GI1M-4107-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
YscD putative type III secretion proteinImported
Gene namesi
Ordered Locus Names:pYV0080Imported
Encoded oniPlasmid pYVImported
OrganismiYersinia pseudotuberculosis serotype I (strain IP32953)Imported
Taxonomic identifieri273123 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia
Proteomesi
  • UP000001011 Componenti: Plasmid pYV

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei122 – 146HelicalSequence analysisAdd BLAST25

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

IntActiQ663I6. 2 interactors.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4D9VX-ray2.52A/B2-121[»]
ProteinModelPortaliQ663I6.
SMRiQ663I6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 95Yop-YscD_cplInterPro annotationAdd BLAST90
Domaini160 – 413Yop-YscD_pplInterPro annotationAdd BLAST254

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOGENOMiHOG000219615.
KOiK03220.
OMAiRQGVDFI.

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
IPR032030. YscD_cytoplasmic_dom.
IPR032034. YscD_ppl.
[Graphical view]
PfamiPF16697. Yop-YscD_cpl. 1 hit.
PF16693. Yop-YscD_ppl. 1 hit.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q663I6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWVCRFYQG KHRGVEVELP HGRCVFGSDP LQSDIVLSDS EIAPVHLVLM
60 70 80 90 100
VDEEGIRLTD SAEPLLQEGL PVPLGTLLRA GSCLEVGFLL WTFVAVGQPL
110 120 130 140 150
PETLQVPTQR KEPTDRLPRS RLGIGLGVLS LLLLLTFLGL LGHGLWREYN
160 170 180 190 200
QDGQLVEQEV RRLLATAAYK DVVLTSPKKE GEPWLLTGYI QDNHARLSLQ
210 220 230 240 250
NFLESHGIPF RLELRSMEEL RQGAEFILQR LGYHGIEVSL APQAGWLQLN
260 270 280 290 300
GEVSEEIQKQ KIDSLLQAEV PGLLGVESKV RIAGNQRKRL DALLEQFGLD
310 320 330 340 350
SDFTVNVKGE LIELRGQVND EKLNSFNQLQ QTFRQEFGNR PKLELVNVGG
360 370 380 390 400
QPQHDELNFE VQAISLGKVP YVVLDNHQRY PEGAILNNGV RILAIRRDAV
410
IVSKGKREFV IQLNGGKPR
Length:419
Mass (Da):46,921
Last modified:October 11, 2004 - v1
Checksum:iBDC9FF9AE6A877DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX936399 Genomic DNA. Translation: CAF25423.1.
RefSeqiWP_002212919.1. NZ_CP009711.1.

Genome annotation databases

EnsemblBacteriaiCAF25423; CAF25423; pYV0080.
KEGGiypo:BZ17_4255.
yps:pYV0080.
PATRICi18637916. VBIYerPse22266_0085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX936399 Genomic DNA. Translation: CAF25423.1.
RefSeqiWP_002212919.1. NZ_CP009711.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4D9VX-ray2.52A/B2-121[»]
ProteinModelPortaliQ663I6.
SMRiQ663I6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ663I6. 2 interactors.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAF25423; CAF25423; pYV0080.
KEGGiypo:BZ17_4255.
yps:pYV0080.
PATRICi18637916. VBIYerPse22266_0085.

Phylogenomic databases

HOGENOMiHOG000219615.
KOiK03220.
OMAiRQGVDFI.

Enzyme and pathway databases

BioCyciYPSE273123:GI1M-4107-MONOMER.

Family and domain databases

Gene3Di2.60.200.20. 1 hit.
InterProiIPR000253. FHA_dom.
IPR008984. SMAD_FHA_domain.
IPR012843. T3SS_YscD/HrpQ.
IPR032030. YscD_cytoplasmic_dom.
IPR032034. YscD_ppl.
[Graphical view]
PfamiPF16697. Yop-YscD_cpl. 1 hit.
PF16693. Yop-YscD_ppl. 1 hit.
[Graphical view]
SUPFAMiSSF49879. SSF49879. 1 hit.
TIGRFAMsiTIGR02500. type_III_yscD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ663I6_YERPS
AccessioniPrimary (citable) accession number: Q663I6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported, PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.