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Protein

Putative Polyprotein CP

Gene

ORF 1

Organism
Cassava vein mosaic virus (CsVMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri739 – 756CCHC-typePROSITE-ProRule annotationAdd BLAST18

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Putative Polyprotein CP
Cleaved into the following 2 chains:
Alternative name(s):
Coat protein
Short name:
CP
Movement protein
Short name:
Mov
Alternative name(s):
Cell-to-cell transport protein
Gene namesi
ORF Names:ORF 1
OrganismiCassava vein mosaic virus (CsVMV)
Taxonomic identifieri38062 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesCaulimoviridaeCavemovirus
Virus hostiManihot esculenta (Cassava) (Jatropha manihot) [TaxID: 3983]
Proteomesi
  • UP000002244 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003979021 – 1372Putative Polyprotein CPAdd BLAST1372
ChainiPRO_0000397903?330 – ?814Capsid proteinSequence analysisAdd BLAST485
ChainiPRO_0000397904?880 – ?1207Movement proteinSequence analysisAdd BLAST328

Proteomic databases

PRIDEiQ66283.

Structurei

3D structure databases

ProteinModelPortaliQ66283.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili126 – 153Sequence analysisAdd BLAST28
Coiled coili299 – 350Sequence analysisAdd BLAST52
Coiled coili1162 – 1189Sequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi803 – 806Poly-Glu4

Sequence similaritiesi

Contains 1 CCHC-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri739 – 756CCHC-typePROSITE-ProRule annotationAdd BLAST18

Keywords - Domaini

Coiled coil, Zinc-finger

Family and domain databases

Gene3Di4.10.60.10. 1 hit.
InterProiIPR028919. Viral_movement.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF01107. MP. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q66283-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDSKDFTQLN LEEHSYKVNR EKLPIDSYIQ YGGFTYANFT PYIIHGDDGF
60 70 80 90 100
GEHKQLNWTN KLLWNKLGKL NIKDTQILMQ NNISEEQHNE LISLEAQKIA
110 120 130 140 150
RENLADRINY LQNINTSIDF KLWKMNKENL ERQELLLRQI NELKEEIKSL
160 170 180 190 200
KNIPSTVAII PTNTYTINMI RTETEDWKYF KYIEKELVQN KTEAIAKILD
210 220 230 240 250
NSYIINDNLG LLYERYEEIN PTPKPYKRPE TIFDTPQYAK YIRNQKRQEE
260 270 280 290 300
YEKQQELKKE NENKEYQEFL EWKEKQQKDK GKGIQTVYPT LIIPDIKPEK
310 320 330 340 350
QKKEDMMLEM IKNLQNELEQ LKIQRHKEHE KQAELTKIQM LEEELEEELD
360 370 380 390 400
PDNLEKEVLN NIQNIQISSD ISESSEINEI SDNETEQISG SDSDYNNEQI
410 420 430 440 450
NVKIEGEEYE YKDNYRYYKP QPPYYKKDIR RERQYKGQSS QRADYIKNRR
460 470 480 490 500
EQFESTYQAN MNTTINDSGE ILNLDCTTPE EAEDRIQKWT QSMSIALVKQ
510 520 530 540 550
QLSNEQAKQF IRRTFIGNVK EWYKNLTNEA KQKLEGNAPL LSLTHMELGL
560 570 580 590 600
RAEFGKLGIE SDVEKHEKKT SIARHKILQL QICSMDHQNL NAYLCEFQEY
610 620 630 640 650
YYSANYTEAE SENILNMFYS KLPEPWGQQV LNGYLSEIKG KNLLDSIGAR
660 670 680 690 700
MTYLQEFISD KCKENWTQKQ ARKIQLSKNL DCSYYEVGKY GCKQIRPHKR
710 720 730 740 750
KRYYKKYIPI KRKYFNKKRY KKYYRPKKFL KRKNPHKACK CYNCGEEGHI
760 770 780 790 800
SPNCKKPKKK TRINNLEALE FKNTEMENLE FETNKNDIIW VEEIEVIQPL
810 820 830 840 850
HYEEEEKYKG NYSDRILQNP YYINSISIEE LDNLDWEFEY QEDIEDDLEY
860 870 880 890 900
QNFVYQESND NWYSDQENWY SDEQYLGIYM FIGETSGENN QDNMEGIIKE
910 920 930 940 950
YNKTEPEKIN KIIFTSEKFK QIMENDLNMT KDKIFHNNKL KKLFGKKEIE
960 970 980 990 1000
YYIVTDIEHP IDVKYVQNQD KIINLPLYNQ EIFENEIQKI PDKDQNKIRN
1010 1020 1030 1040 1050
IHLAAVEIVV KAYFREGIDT PFEIILCDDR ITYPQEGSLV EVLIGNLIYQ
1060 1070 1080 1090 1100
KVKFTKIINY SISIEDKNLD KSLVMYWNLE GIKMIKDSKI FSIRLRNLYV
1110 1120 1130 1140 1150
LSNKHIVKNK KQYNGNIIIE PIFQDVIQNN NRNYIEYGKP GKFDRTKLKS
1160 1170 1180 1190 1200
YSRRFNEPLR LDDRTNIQRE KDQIEKADHN LELQKELNNL NYYSQQGQSS
1210 1220 1230 1240 1250
NVLDIPKILK IENTKNNYKQ FHIIGKITEG RLNKFYPILI DTGAADSYIS
1260 1270 1280 1290 1300
SKILEDEKLV SNKLSKVVTS YNADNEKHIY DRNTEVIIEL IDKNNEKYKI
1310 1320 1330 1340 1350
NFIGLVDQLR LLEGGKAEIL LGMNILQNLK PYCITDDYLE INLGFRCIKI
1360 1370
NRIKKDIFEI REDLQQMNVL NE
Length:1,372
Mass (Da):163,728
Last modified:November 1, 1996 - v1
Checksum:i6DBE63116A8DD93F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U59751 Genomic DNA. Translation: AAB03325.1.
RefSeqiNP_056846.1. NC_001648.1.

Genome annotation databases

GeneIDi1403415.
KEGGivg:1403415.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U59751 Genomic DNA. Translation: AAB03325.1.
RefSeqiNP_056846.1. NC_001648.1.

3D structure databases

ProteinModelPortaliQ66283.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ66283.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1403415.
KEGGivg:1403415.

Family and domain databases

Gene3Di4.10.60.10. 1 hit.
InterProiIPR028919. Viral_movement.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF01107. MP. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]
SUPFAMiSSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCP_CSVMV
AccessioniPrimary (citable) accession number: Q66283
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: November 1, 1996
Last modified: October 5, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.