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Protein

Capsid protein

Gene

CP

Organism
Youcai mosaic virus (YoMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiYoucai mosaic virus (YoMV)
Taxonomic identifieri228578 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiBrassica napus (Rape) [TaxID: 3708]
Proteomesi
  • UP000008609 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by host
ChainiPRO_00001449302 – 157Capsid proteinAdd BLAST156

Structurei

3D structure databases

ProteinModelPortaliQ66222.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG0900011A.

Family and domain databases

Gene3Di1.20.120.70. 1 hit.
InterProiView protein in InterPro
IPR001337. TMV-like_coat.
IPR036417. TMV-like_coat_sf.
PfamiView protein in Pfam
PF00721. TMV_coat. 1 hit.
SUPFAMiSSF47195. SSF47195. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q66222-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVYNITSSNQ YQYFAAMWAE PTAMLNQCVS ALSQSYQTQA ARDTVRQQFS
60 70 80 90 100
NLLSAIVTPN QRFPEAGYRV YINSAVLKPL YESLMKSFDT RNRIIETEEE
110 120 130 140 150
SRPSASEVAN ATQRVDDATV AIRSQIQLLL NELSNGHGLM NRAEFEVLLP

WATAPAT
Length:157
Mass (Da):17,644
Last modified:January 23, 2007 - v3
Checksum:i3E8036F3A06C87D0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U30944 mRNA. Translation: AAB60601.1.
PIRiS65055.
RefSeqiNP_740759.1. NC_004422.1.

Genome annotation databases

GeneIDi955945.
KEGGivg:955945.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_YOMV
AccessioniPrimary (citable) accession number: Q66222
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: January 23, 2007
Last modified: November 22, 2017
This is version 63 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families