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Q66098 (CAPSD_CRSVL) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene names
ORF Names:ORF2
OrganismCarnation ringspot virus (isolate Lommel) (CRSV) [Complete proteome]
Taxonomic identifier652597 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeDianthovirus
Virus hostDianthus barbatus [TaxID: 278075]
Dianthus caryophyllus (Carnation) (Clove pink) [TaxID: 3570]

Protein attributes

Sequence length345 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 31-34 nm in diameter, and consisting of 180 capsid proteins.

Subunit structure

Homomultimer Potential.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the icosahedral plant coat protein family.

Ontologies

Keywords
   Cellular componentCapsid protein
T=3 icosahedral capsid protein
Virion
   LigandRNA-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentT=3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 345345Capsid protein
PRO_0000398300

Regions

Region1 – 4747R domain, interaction with RNA By similarity
Region48 – 209162S domain, virion shell By similarity
Region210 – 345136P domain, projecting By similarity

Sequences

Sequence LengthMass (Da)Tools
Q66098 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 7CC0FE0687C26C4F

FASTA34537,921
        10         20         30         40         50         60 
MTSRQSRKSK MALVPKQRQN LARTVKTVKI PYATTQIVTT SNPPKKGQIK VSGRQLFMSL 

        70         80         90        100        110        120 
ITSSSFVVNN GLPTPSLLSL NPSNQYLFPS LAYEAANYDL YRFAKLRLSY VHDTNATVSG 

       130        140        150        160        170        180 
RVSLMWDRDS QDVPPNSRVS IPQCTKSVST AVYESCAIDL PIDDVWRFVR DTDVVDRKLS 

       190        200        210        220        230        240 
DYGQIFTAVH SGSTTDEVGD VYLDYTIELK DRQPTASMVQ TAYWDVSGVL AKSEGPRYFS 

       250        260        270        280        290        300 
PSSDVTFTST MAAISLQLSG IFNVQVVVTC TTAGTLVVGP NISVIGAMYS QFTTPRYFAQ 

       310        320        330        340 
PVLACTGVPN GTPSVSMTGF AGITRITLVI TRLPPETRCR NRQFP 

« Hide

References

[1]"Nucleotide sequence of carnation ringspot dianthovirus RNA-1."
Ryabov E.V., Generozov E.V., Kendall T.L., Lommel S.A., Zavriev S.K.
J. Gen. Virol. 75:243-247(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]Sit T.L., Lommel S.A.
Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
L18870 Genomic RNA. Translation: AAA20213.1.
RefSeqNP_613255.1. NC_003530.1.

3D structure databases

ProteinModelPortalQ66098.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID956635.

Family and domain databases

Gene3D2.60.120.20. 1 hit.
InterProIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSPR00233. ICOSAHEDRAL.
ProtoNetSearch...

Entry information

Entry nameCAPSD_CRSVL
AccessionPrimary (citable) accession number: Q66098
Entry history
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families