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Q66098

- CAPSD_CRSVL

UniProt

Q66098 - CAPSD_CRSVL

Protein

Capsid protein

Gene

ORF2

Organism
Carnation ringspot virus (isolate Lommel) (CRSV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 31-34 nm in diameter, and consisting of 180 capsid proteins.

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural molecule activity Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein
    Alternative name(s):
    Coat protein
    Gene namesi
    ORF Names:ORF2
    OrganismiCarnation ringspot virus (isolate Lommel) (CRSV)
    Taxonomic identifieri652597 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeDianthovirus
    Virus hostiDianthus barbatus [TaxID: 278075]
    Dianthus caryophyllus (Carnation) (Clove pink) [TaxID: 3570]
    ProteomesiUP000000574: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 345345Capsid proteinPRO_0000398300Add
    BLAST

    Interactioni

    Subunit structurei

    Homomultimer.Curated

    Structurei

    3D structure databases

    ProteinModelPortaliQ66098.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni1 – 4747R domain, interaction with RNABy similarityAdd
    BLAST
    Regioni48 – 209162S domain, virion shellBy similarityAdd
    BLAST
    Regioni210 – 345136P domain, projectingBy similarityAdd
    BLAST

    Sequence similaritiesi

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF00729. Viral_coat. 1 hit.
    [Graphical view]
    PRINTSiPR00233. ICOSAHEDRAL.

    Sequencei

    Sequence statusi: Complete.

    Q66098-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTSRQSRKSK MALVPKQRQN LARTVKTVKI PYATTQIVTT SNPPKKGQIK    50
    VSGRQLFMSL ITSSSFVVNN GLPTPSLLSL NPSNQYLFPS LAYEAANYDL 100
    YRFAKLRLSY VHDTNATVSG RVSLMWDRDS QDVPPNSRVS IPQCTKSVST 150
    AVYESCAIDL PIDDVWRFVR DTDVVDRKLS DYGQIFTAVH SGSTTDEVGD 200
    VYLDYTIELK DRQPTASMVQ TAYWDVSGVL AKSEGPRYFS PSSDVTFTST 250
    MAAISLQLSG IFNVQVVVTC TTAGTLVVGP NISVIGAMYS QFTTPRYFAQ 300
    PVLACTGVPN GTPSVSMTGF AGITRITLVI TRLPPETRCR NRQFP 345
    Length:345
    Mass (Da):37,921
    Last modified:November 1, 1996 - v1
    Checksum:i7CC0FE0687C26C4F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L18870 Genomic RNA. Translation: AAA20213.1.
    RefSeqiNP_613255.1. NC_003530.1.

    Genome annotation databases

    GeneIDi956635.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L18870 Genomic RNA. Translation: AAA20213.1 .
    RefSeqi NP_613255.1. NC_003530.1.

    3D structure databases

    ProteinModelPortali Q66098.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 956635.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR000937. Capsid_prot_S-dom_vir.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF00729. Viral_coat. 1 hit.
    [Graphical view ]
    PRINTSi PR00233. ICOSAHEDRAL.
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequence of carnation ringspot dianthovirus RNA-1."
      Ryabov E.V., Generozov E.V., Kendall T.L., Lommel S.A., Zavriev S.K.
      J. Gen. Virol. 75:243-247(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
    2. Sit T.L., Lommel S.A.
      Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_CRSVL
    AccessioniPrimary (citable) accession number: Q66098
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 5, 2010
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3