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Q66098

- CAPSD_CRSVL

UniProt

Q66098 - CAPSD_CRSVL

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Protein

Capsid protein

Gene

ORF2

Organism
Carnation ringspot virus (isolate Lommel) (CRSV)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 31-34 nm in diameter, and consisting of 180 capsid proteins.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural molecule activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
ORF Names:ORF2
OrganismiCarnation ringspot virus (isolate Lommel) (CRSV)
Taxonomic identifieri652597 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageTombusviridaeDianthovirus
Virus hostiDianthus barbatus [TaxID: 278075]
Dianthus caryophyllus (Carnation) (Clove pink) [TaxID: 3570]
ProteomesiUP000000574: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 345345Capsid proteinPRO_0000398300Add
BLAST

Interactioni

Subunit structurei

Homomultimer.Curated

Structurei

3D structure databases

ProteinModelPortaliQ66098.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 4747R domain, interaction with RNABy similarityAdd
BLAST
Regioni48 – 209162S domain, virion shellBy similarityAdd
BLAST
Regioni210 – 345136P domain, projectingBy similarityAdd
BLAST

Sequence similaritiesi

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00729. Viral_coat. 1 hit.
[Graphical view]
PRINTSiPR00233. ICOSAHEDRAL.

Sequencei

Sequence statusi: Complete.

Q66098-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTSRQSRKSK MALVPKQRQN LARTVKTVKI PYATTQIVTT SNPPKKGQIK
60 70 80 90 100
VSGRQLFMSL ITSSSFVVNN GLPTPSLLSL NPSNQYLFPS LAYEAANYDL
110 120 130 140 150
YRFAKLRLSY VHDTNATVSG RVSLMWDRDS QDVPPNSRVS IPQCTKSVST
160 170 180 190 200
AVYESCAIDL PIDDVWRFVR DTDVVDRKLS DYGQIFTAVH SGSTTDEVGD
210 220 230 240 250
VYLDYTIELK DRQPTASMVQ TAYWDVSGVL AKSEGPRYFS PSSDVTFTST
260 270 280 290 300
MAAISLQLSG IFNVQVVVTC TTAGTLVVGP NISVIGAMYS QFTTPRYFAQ
310 320 330 340
PVLACTGVPN GTPSVSMTGF AGITRITLVI TRLPPETRCR NRQFP
Length:345
Mass (Da):37,921
Last modified:November 1, 1996 - v1
Checksum:i7CC0FE0687C26C4F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L18870 Genomic RNA. Translation: AAA20213.1.
RefSeqiNP_613255.1. NC_003530.1.

Genome annotation databases

GeneIDi956635.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L18870 Genomic RNA. Translation: AAA20213.1 .
RefSeqi NP_613255.1. NC_003530.1.

3D structure databases

ProteinModelPortali Q66098.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 956635.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR000937. Capsid_prot_S-dom_vir.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF00729. Viral_coat. 1 hit.
[Graphical view ]
PRINTSi PR00233. ICOSAHEDRAL.
ProtoNeti Search...

Publicationsi

  1. "Nucleotide sequence of carnation ringspot dianthovirus RNA-1."
    Ryabov E.V., Generozov E.V., Kendall T.L., Lommel S.A., Zavriev S.K.
    J. Gen. Virol. 75:243-247(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
  2. Sit T.L., Lommel S.A.
    Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_CRSVL
AccessioniPrimary (citable) accession number: Q66098
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 5, 2010
Last sequence update: November 1, 1996
Last modified: October 1, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3