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Protein

Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic

Gene

Os05g0495700

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved in cell redox homeostasis.By similarity

Catalytic activityi

sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei192 – 1921NAD; via amide nitrogenBy similarity
Binding sitei192 – 1921SubstrateBy similarity
Binding sitei231 – 2311NAD; via amide nitrogenBy similarity
Active sitei281 – 2811Proton acceptorBy similarity
Binding sitei343 – 3431NADBy similarity
Binding sitei371 – 3711NADBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi44 – 496NADBy similarity

GO - Molecular functioni

  1. glycerol-3-phosphate dehydrogenase [NAD+] activity Source: UniProtKB-EC
  2. NAD binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
  2. glycerol-3-phosphate catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic (EC:1.1.1.8)
Gene namesi
Ordered Locus Names:Os05g0495700, LOC_Os05g41590
ORF Names:OJ1579_G03.13, OsJ_19053
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763 Componenti: Chromosome 5

Organism-specific databases

GrameneiQ65X70.

Subcellular locationi

  1. Cytoplasmcytosol By similarity

GO - Cellular componenti

  1. cytosol Source: UniProtKB-SubCell
  2. glycerol-3-phosphate dehydrogenase complex Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 465465Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolicPRO_0000420179Add
BLAST

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni343 – 3442Substrate bindingBy similarity

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000238366.
InParanoidiQ65X70.
OMAiMVGSYAN.

Family and domain databases

Gene3Di1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR008927. 6-PGluconate_DH_C-like.
IPR013328. 6PGD_dom_2.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERiPTHR11728. PTHR11728. 1 hit.
PfamiPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PRINTSiPR00077. GPDHDRGNASE.
SUPFAMiSSF48179. SSF48179. 1 hit.

Sequencei

Sequence statusi: Complete.

Q65X70-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVGSYAAGGG RGAAVAAVAE GKLDELRRRM GKADGDLLRI VGVGGGAWGS
60 70 80 90 100
AFCALLQDAY GRHRDKAQVR VWRRPGRAVD RATAEHLFEV INSREDVLRR
110 120 130 140 150
LIRRCAYLKY VEARLGDRTL YADEILRDGF CLNMVDTPLC PLKVVTNLQE
160 170 180 190 200
AVWDADIVIN GLPSTETREV FGEIGRYWKE RIRPPVIISL AKGIEASIDP
210 220 230 240 250
VPRIITPTQM ISNATGVPLE NILYLGGPNI ASEIYNKEYA NARICGADKW
260 270 280 290 300
RKPLAKFLRQ PHFIVWDNSD LITHEVMGGL KNIYAIGAGM VAALTNESAT
310 320 330 340 350
SKSVYFSLCT SEMIYITHLL AEDPEKLAGP LLADTYVTLL KGRNAWYGQK
360 370 380 390 400
LAKGELTLEM GDSIKGKGTI QGVSAVHAFY ELLSQSSLSV THPEVKKLVA
410 420 430 440 450
PVELCPILKT LYKILIKREL ATDSILQAIR DESMYDPRER IEMSQRQCLY
460
RPSLLGLPKV DITQA
Length:465
Mass (Da):51,485
Last modified:October 25, 2004 - v1
Checksum:iA47AC2476C4472F8
GO

Sequence cautioni

The sequence BAF17847.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112160 Genomic DNA. Translation: AAU44049.1.
AP008211 Genomic DNA. Translation: BAF17847.1. Different initiation.
CM000142 Genomic DNA. Translation: EEE64220.1.
AK101484 mRNA. Translation: BAG95083.1.
RefSeqiNP_001055933.1. NM_001062468.1.
UniGeneiOs.11570.

Genome annotation databases

EnsemblPlantsiOS05T0495700-01; OS05T0495700-01; OS05G0495700.
GeneIDi4339200.
KEGGiosa:4339200.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112160 Genomic DNA. Translation: AAU44049.1.
AP008211 Genomic DNA. Translation: BAF17847.1. Different initiation.
CM000142 Genomic DNA. Translation: EEE64220.1.
AK101484 mRNA. Translation: BAG95083.1.
RefSeqiNP_001055933.1. NM_001062468.1.
UniGeneiOs.11570.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS05T0495700-01; OS05T0495700-01; OS05G0495700.
GeneIDi4339200.
KEGGiosa:4339200.

Organism-specific databases

GrameneiQ65X70.

Phylogenomic databases

HOGENOMiHOG000238366.
InParanoidiQ65X70.
OMAiMVGSYAN.

Family and domain databases

Gene3Di1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR008927. 6-PGluconate_DH_C-like.
IPR013328. 6PGD_dom_2.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERiPTHR11728. PTHR11728. 1 hit.
PfamiPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PRINTSiPR00077. GPDHDRGNASE.
SUPFAMiSSF48179. SSF48179. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiGPDH3_ORYSJ
AccessioniPrimary (citable) accession number: Q65X70
Secondary accession number(s): Q0DH26
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2012
Last sequence update: October 25, 2004
Last modified: April 29, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.