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Q65X70 (GPDH3_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic

EC=1.1.1.8
Gene names
Ordered Locus Names:Os05g0495700, LOC_Os05g41590
ORF Names:OJ1579_G03.13, OsJ_19053
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length465 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May be involved in cell redox homeostasis By similarity.

Catalytic activity

sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH.

Subcellular location

Cytoplasmcytosol By similarity.

Sequence similarities

Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.

Sequence caution

The sequence BAF17847.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 465465Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic
PRO_0000420179

Regions

Nucleotide binding44 – 496NAD By similarity
Region343 – 3442Substrate binding By similarity

Sites

Active site2811Proton acceptor By similarity
Binding site1921NAD; via amide nitrogen By similarity
Binding site1921Substrate By similarity
Binding site2311NAD; via amide nitrogen By similarity
Binding site3431NAD By similarity
Binding site3711NAD By similarity

Sequences

Sequence LengthMass (Da)Tools
Q65X70 [UniParc].

Last modified October 25, 2004. Version 1.
Checksum: A47AC2476C4472F8

FASTA46551,485
        10         20         30         40         50         60 
MVGSYAAGGG RGAAVAAVAE GKLDELRRRM GKADGDLLRI VGVGGGAWGS AFCALLQDAY 

        70         80         90        100        110        120 
GRHRDKAQVR VWRRPGRAVD RATAEHLFEV INSREDVLRR LIRRCAYLKY VEARLGDRTL 

       130        140        150        160        170        180 
YADEILRDGF CLNMVDTPLC PLKVVTNLQE AVWDADIVIN GLPSTETREV FGEIGRYWKE 

       190        200        210        220        230        240 
RIRPPVIISL AKGIEASIDP VPRIITPTQM ISNATGVPLE NILYLGGPNI ASEIYNKEYA 

       250        260        270        280        290        300 
NARICGADKW RKPLAKFLRQ PHFIVWDNSD LITHEVMGGL KNIYAIGAGM VAALTNESAT 

       310        320        330        340        350        360 
SKSVYFSLCT SEMIYITHLL AEDPEKLAGP LLADTYVTLL KGRNAWYGQK LAKGELTLEM 

       370        380        390        400        410        420 
GDSIKGKGTI QGVSAVHAFY ELLSQSSLSV THPEVKKLVA PVELCPILKT LYKILIKREL 

       430        440        450        460 
ATDSILQAIR DESMYDPRER IEMSQRQCLY RPSLLGLPKV DITQA 

« Hide

References

« Hide 'large scale' references
[1]"A fine physical map of the rice chromosome 5."
Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.
Mol. Genet. Genomics 274:337-345(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC112160 Genomic DNA. Translation: AAU44049.1.
AP008211 Genomic DNA. Translation: BAF17847.1. Different initiation.
CM000142 Genomic DNA. Translation: EEE64220.1.
AK101484 mRNA. Translation: BAG95083.1.
RefSeqNP_001055933.1. NM_001062468.1.
UniGeneOs.11570.

3D structure databases

ProteinModelPortalQ65X70.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS05T0495700-01; OS05T0495700-01; OS05G0495700.
GeneID4339200.
KEGGosa:4339200.

Organism-specific databases

GrameneQ65X70.

Phylogenomic databases

OMASLCTSEM.
ProtClustDBCLSN2683781.

Family and domain databases

Gene3D1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProIPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERPTHR11728. PTHR11728. 1 hit.
PfamPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 1 hit.
[Graphical view]
PRINTSPR00077. GPDHDRGNASE.
SUPFAMSSF48179. SSF48179. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGPDH3_ORYSJ
AccessionPrimary (citable) accession number: Q65X70
Secondary accession number(s): Q0DH26
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2012
Last sequence update: October 25, 2004
Last modified: April 16, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations