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Q65UD8

- Q65UD8_MANSM

UniProt

Q65UD8 - Q65UD8_MANSM

Protein
Submitted name:

PepD protein

Gene

pepD

Organism
Mannheimia succiniciproducens (strain MBEL55E)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 1 (25 Oct 2004)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Release of the N-terminal residue from a tripeptide.SAAS annotation

    Cofactori

    Binds 2 zinc ions per subunit.UniRule annotationSAAS annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi80 – 801Zinc 1UniRule annotation
    Active sitei82 – 821UniRule annotation
    Metal bindingi142 – 1421Zinc 1UniRule annotation
    Metal bindingi142 – 1421Zinc 2UniRule annotation
    Active sitei175 – 1751Proton acceptorUniRule annotation
    Metal bindingi176 – 1761Zinc 2UniRule annotation
    Metal bindingi198 – 1981Zinc 1UniRule annotation
    Metal bindingi381 – 3811Zinc 2UniRule annotation

    GO - Molecular functioni

    1. metallopeptidase activity Source: UniProtKB-KW
    2. tripeptide aminopeptidase activity Source: InterPro
    3. zinc ion binding Source: InterPro

    GO - Biological processi

    1. peptide metabolic process Source: InterPro

    Keywords - Molecular functioni

    AminopeptidaseSAAS annotation, Hydrolase, MetalloproteaseSAAS annotation, Protease

    Keywords - Ligandi

    Metal-bindingUniRule annotationSAAS annotation, ZincUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciBMAN221988:GHGM-843-MONOMER.

    Protein family/group databases

    MEROPSiM20.003.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    PepD proteinImported
    Gene namesi
    Name:pepDImported
    Ordered Locus Names:MS0815Imported
    OrganismiMannheimia succiniciproducens (strain MBEL55E)Imported
    Taxonomic identifieri221988 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeBasfia
    ProteomesiUP000000607: Chromosome

    Subcellular locationi

    Cytoplasm SAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi221988.MS0815.

    Structurei

    3D structure databases

    ProteinModelPortaliQ65UD8.
    SMRiQ65UD8. Positions 5-408.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG2195.
    HOGENOMiHOG000032390.
    KOiK01258.
    OMAiDCYIEVT.
    OrthoDBiEOG6SV59Q.

    Family and domain databases

    Gene3Di3.30.70.360. 1 hit.
    InterProiIPR001261. ArgE/DapE_CS.
    IPR002933. Peptidase_M20.
    IPR011650. Peptidase_M20_dimer.
    IPR010161. Peptidase_M20B.
    [Graphical view]
    PfamiPF07687. M20_dimer. 1 hit.
    PF01546. Peptidase_M20. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037215. Peptidase_M20B. 1 hit.
    SUPFAMiSSF55031. SSF55031. 1 hit.
    TIGRFAMsiTIGR01882. peptidase-T. 1 hit.
    PROSITEiPS00758. ARGE_DAPE_CPG2_1. 1 hit.
    PS00759. ARGE_DAPE_CPG2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q65UD8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQYNEQLLER FFNYVSLDTQ SKPGAKTSPS TQGQLKLAKI LEQELYSLGL    50
    DEIEVSKHGI VTALLPGNIE NSPTIGLIAH LDTSPQCSGK NVKPEVIENY 100
    RGGDIALGLG DEFISPVTFT FLHKLVGKTL IVTDGTTLLG ADNKAGIAEI 150
    MTALSQLKES SVPRCHIRVA FTPDEEIGLG MKFFPIEKFS CDWAYTIDGG 200
    AVGELEYENF NAAGATVTIF GRAIHPGSAK DKMVNALTLA CEFQQGFPTD 250
    EVPEKTEEKQ GFFHLNSFHG DIEKVELHYL IRDFDKQAFT QRKAFLEKWV 300
    DEFNCRKQLK EPVKVTITDN YYNMYDTVSK VPQSIELADS AMKACGIVPI 350
    HQPIRGGTDG AWLAEKGLAC PNIFTGGYNF HSKHELITLE GMCSAVDVIM 400
    KIAQLAVK 408
    Length:408
    Mass (Da):45,022
    Last modified:October 25, 2004 - v1
    Checksum:iACD9956C3A275194
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016827 Genomic DNA. Translation: AAU37422.1.
    RefSeqiWP_011199994.1. NC_006300.1.
    YP_088007.1. NC_006300.1.

    Genome annotation databases

    EnsemblBacteriaiAAU37422; AAU37422; MS0815.
    GeneIDi3076657.
    KEGGimsu:MS0815.
    PATRICi22445009. VBIManSuc86752_0746.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016827 Genomic DNA. Translation: AAU37422.1 .
    RefSeqi WP_011199994.1. NC_006300.1.
    YP_088007.1. NC_006300.1.

    3D structure databases

    ProteinModelPortali Q65UD8.
    SMRi Q65UD8. Positions 5-408.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 221988.MS0815.

    Protein family/group databases

    MEROPSi M20.003.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAU37422 ; AAU37422 ; MS0815 .
    GeneIDi 3076657.
    KEGGi msu:MS0815.
    PATRICi 22445009. VBIManSuc86752_0746.

    Phylogenomic databases

    eggNOGi COG2195.
    HOGENOMi HOG000032390.
    KOi K01258.
    OMAi DCYIEVT.
    OrthoDBi EOG6SV59Q.

    Enzyme and pathway databases

    BioCyci BMAN221988:GHGM-843-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.360. 1 hit.
    InterProi IPR001261. ArgE/DapE_CS.
    IPR002933. Peptidase_M20.
    IPR011650. Peptidase_M20_dimer.
    IPR010161. Peptidase_M20B.
    [Graphical view ]
    Pfami PF07687. M20_dimer. 1 hit.
    PF01546. Peptidase_M20. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037215. Peptidase_M20B. 1 hit.
    SUPFAMi SSF55031. SSF55031. 1 hit.
    TIGRFAMsi TIGR01882. peptidase-T. 1 hit.
    PROSITEi PS00758. ARGE_DAPE_CPG2_1. 1 hit.
    PS00759. ARGE_DAPE_CPG2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens."
      Hong S.H., Kim J.S., Lee S.Y., In Y.H., Choi S.S., Rih J.-K., Kim C.H., Jeong H., Hur C.G., Kim J.J.
      Nat. Biotechnol. 22:1275-1281(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MBEL55EImported.

    Entry informationi

    Entry nameiQ65UD8_MANSM
    AccessioniPrimary (citable) accession number: Q65UD8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 25, 2004
    Last sequence update: October 25, 2004
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3