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Q65UD8

- Q65UD8_MANSM

UniProt

Q65UD8 - Q65UD8_MANSM

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Protein
Submitted name:

PepD protein

Gene

pepD

Organism
Mannheimia succiniciproducens (strain MBEL55E)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

Catalytic activityi

Release of the N-terminal residue from a tripeptide.SAAS annotation

Cofactori

Note: Binds 2 zinc ions per subunit.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi80 – 801Zinc 1UniRule annotation
Active sitei82 – 821UniRule annotation
Metal bindingi142 – 1421Zinc 1UniRule annotation
Metal bindingi142 – 1421Zinc 2UniRule annotation
Active sitei175 – 1751Proton acceptorUniRule annotation
Metal bindingi176 – 1761Zinc 2UniRule annotation
Metal bindingi198 – 1981Zinc 1UniRule annotation
Metal bindingi381 – 3811Zinc 2UniRule annotation

GO - Molecular functioni

  1. metallopeptidase activity Source: UniProtKB-KW
  2. tripeptide aminopeptidase activity Source: InterPro
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. peptide metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

AminopeptidaseSAAS annotation, Hydrolase, MetalloproteaseSAAS annotation, Protease

Keywords - Ligandi

Metal-bindingUniRule annotationSAAS annotation, ZincUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciBMAN221988:GHGM-843-MONOMER.

Protein family/group databases

MEROPSiM20.003.

Names & Taxonomyi

Protein namesi
Submitted name:
PepD proteinImported
Gene namesi
Name:pepDImported
Ordered Locus Names:MS0815Imported
OrganismiMannheimia succiniciproducens (strain MBEL55E)Imported
Taxonomic identifieri221988 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeBasfia
ProteomesiUP000000607: Chromosome

Subcellular locationi

Cytoplasm SAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi221988.MS0815.

Structurei

3D structure databases

ProteinModelPortaliQ65UD8.
SMRiQ65UD8. Positions 5-408.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2195.
HOGENOMiHOG000032390.
KOiK01258.
OMAiDCYIEVT.
OrthoDBiEOG6SV59Q.

Family and domain databases

Gene3Di3.30.70.360. 1 hit.
InterProiIPR001261. ArgE/DapE_CS.
IPR002933. Peptidase_M20.
IPR011650. Peptidase_M20_dimer.
IPR010161. Peptidase_M20B.
[Graphical view]
PfamiPF07687. M20_dimer. 1 hit.
PF01546. Peptidase_M20. 1 hit.
[Graphical view]
PIRSFiPIRSF037215. Peptidase_M20B. 1 hit.
SUPFAMiSSF55031. SSF55031. 1 hit.
TIGRFAMsiTIGR01882. peptidase-T. 1 hit.
PROSITEiPS00758. ARGE_DAPE_CPG2_1. 1 hit.
PS00759. ARGE_DAPE_CPG2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q65UD8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQYNEQLLER FFNYVSLDTQ SKPGAKTSPS TQGQLKLAKI LEQELYSLGL
60 70 80 90 100
DEIEVSKHGI VTALLPGNIE NSPTIGLIAH LDTSPQCSGK NVKPEVIENY
110 120 130 140 150
RGGDIALGLG DEFISPVTFT FLHKLVGKTL IVTDGTTLLG ADNKAGIAEI
160 170 180 190 200
MTALSQLKES SVPRCHIRVA FTPDEEIGLG MKFFPIEKFS CDWAYTIDGG
210 220 230 240 250
AVGELEYENF NAAGATVTIF GRAIHPGSAK DKMVNALTLA CEFQQGFPTD
260 270 280 290 300
EVPEKTEEKQ GFFHLNSFHG DIEKVELHYL IRDFDKQAFT QRKAFLEKWV
310 320 330 340 350
DEFNCRKQLK EPVKVTITDN YYNMYDTVSK VPQSIELADS AMKACGIVPI
360 370 380 390 400
HQPIRGGTDG AWLAEKGLAC PNIFTGGYNF HSKHELITLE GMCSAVDVIM

KIAQLAVK
Length:408
Mass (Da):45,022
Last modified:October 25, 2004 - v1
Checksum:iACD9956C3A275194
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016827 Genomic DNA. Translation: AAU37422.1.
RefSeqiYP_088007.1. NC_006300.1.

Genome annotation databases

EnsemblBacteriaiAAU37422; AAU37422; MS0815.
GeneIDi3076657.
KEGGimsu:MS0815.
PATRICi22445009. VBIManSuc86752_0746.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016827 Genomic DNA. Translation: AAU37422.1 .
RefSeqi YP_088007.1. NC_006300.1.

3D structure databases

ProteinModelPortali Q65UD8.
SMRi Q65UD8. Positions 5-408.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 221988.MS0815.

Protein family/group databases

MEROPSi M20.003.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAU37422 ; AAU37422 ; MS0815 .
GeneIDi 3076657.
KEGGi msu:MS0815.
PATRICi 22445009. VBIManSuc86752_0746.

Phylogenomic databases

eggNOGi COG2195.
HOGENOMi HOG000032390.
KOi K01258.
OMAi DCYIEVT.
OrthoDBi EOG6SV59Q.

Enzyme and pathway databases

BioCyci BMAN221988:GHGM-843-MONOMER.

Family and domain databases

Gene3Di 3.30.70.360. 1 hit.
InterProi IPR001261. ArgE/DapE_CS.
IPR002933. Peptidase_M20.
IPR011650. Peptidase_M20_dimer.
IPR010161. Peptidase_M20B.
[Graphical view ]
Pfami PF07687. M20_dimer. 1 hit.
PF01546. Peptidase_M20. 1 hit.
[Graphical view ]
PIRSFi PIRSF037215. Peptidase_M20B. 1 hit.
SUPFAMi SSF55031. SSF55031. 1 hit.
TIGRFAMsi TIGR01882. peptidase-T. 1 hit.
PROSITEi PS00758. ARGE_DAPE_CPG2_1. 1 hit.
PS00759. ARGE_DAPE_CPG2_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens."
    Hong S.H., Kim J.S., Lee S.Y., In Y.H., Choi S.S., Rih J.-K., Kim C.H., Jeong H., Hur C.G., Kim J.J.
    Nat. Biotechnol. 22:1275-1281(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MBEL55EImported.

Entry informationi

Entry nameiQ65UD8_MANSM
AccessioniPrimary (citable) accession number: Q65UD8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: November 26, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3