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Protein

HTH-type transcriptional activator RhaR

Gene

rhaR

Organism
Mannheimia succiniciproducens (strain MBEL55E)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Activates expression of the rhaSR operon in response to L-rhamnose.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi190 – 209H-T-H motifUniRule annotationAdd BLAST20
DNA bindingi239 – 262H-T-H motifUniRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processRhamnose metabolism, Transcription, Transcription regulation

Enzyme and pathway databases

BioCyciMSUC221988:MS_RS10555-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional activator RhaRUniRule annotation
Alternative name(s):
L-rhamnose operon transcriptional activator RhaRUniRule annotation
Gene namesi
Name:rhaRUniRule annotation
Ordered Locus Names:MS2323
OrganismiMannheimia succiniciproducens (strain MBEL55E)
Taxonomic identifieri221988 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeBasfia
Proteomesi
  • UP000000607 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001945551 – 276HTH-type transcriptional activator RhaRAdd BLAST276

Proteomic databases

PRIDEiQ65Q30

Interactioni

Subunit structurei

Binds DNA as a dimer.UniRule annotation

Protein-protein interaction databases

STRINGi221988.MS2323

Structurei

3D structure databases

ProteinModelPortaliQ65Q30
SMRiQ65Q30
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4108BRW Bacteria
ENOG410XYX0 LUCA
HOGENOMiHOG000290513
KOiK02854
OMAiNREVGMT
OrthoDBiPOG091H039M

Family and domain databases

Gene3Di2.60.120.10, 1 hit
HAMAPiMF_01533 HTH_type_RhaR, 1 hit
InterProiView protein in InterPro
IPR003313 AraC-bd
IPR009057 Homeobox-like_sf
IPR037923 HTH-like
IPR018060 HTH_AraC
IPR018062 HTH_AraC-typ_CS
IPR014710 RmlC-like_jellyroll
IPR023699 Tscrpt_act_RhaR
IPR020449 Tscrpt_reg_HTH_AraC-type
PfamiView protein in Pfam
PF02311 AraC_binding, 1 hit
PF12833 HTH_18, 1 hit
PRINTSiPR00032 HTHARAC
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
SSF51215 SSF51215, 1 hit
PROSITEiView protein in PROSITE
PS00041 HTH_ARAC_FAMILY_1, 1 hit
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q65Q30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDILQLSHH SYFISEESPI TVERRHYQPP FPLHRHDFNE IVIISAGNGI
60 70 80 90 100
HFWNDEIHPI TTGNVLYIES GDKHKYGEVD KLKLDNILYR PEKLSLFPIM
110 120 130 140 150
KDYIPHNNEK KSLRINQETL VQLQSLISQL EIESKKTNKS SMHLSEAIFL
160 170 180 190 200
QILILICRTQ QQENKAYSDI SKLESLFSAL NQSISQEFYL ADFCRQHQLA
210 220 230 240 250
VSSVRRIFKQ QTNMTIAQYL QKLRLCRAAT LLRNTSESVA NIAIRCGYSD
260 270
SNYFSSVFGK TFSCTPTEYR SRFIKK
Length:276
Mass (Da):32,114
Last modified:October 25, 2004 - v1
Checksum:i7DC561F52D1F9530
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016827 Genomic DNA Translation: AAU38930.1
RefSeqiWP_011201468.1, NC_006300.1

Genome annotation databases

EnsemblBacteriaiAAU38930; AAU38930; MS2323
KEGGimsu:MS2323

Similar proteinsi

Entry informationi

Entry nameiRHAR_MANSM
AccessioniPrimary (citable) accession number: Q65Q30
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: October 25, 2004
Last modified: June 20, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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