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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ykoU

Organism
Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBLIC279010:GJ2P-1486-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:ykoUImported
Ordered Locus Names:BL03626Imported
OrganismiBacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46)Imported
Taxonomic identifieri279010 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000000606 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi279010.BL03626.

Structurei

3D structure databases

ProteinModelPortaliQ65KL9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000008893.
KOiK01971.
OMAiMISSPDK.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q65KL9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGITMQPVLT TSAPSGGNWR YEVKYDGYRG LLKIAATGEV SLISRNSQPL
60 70 80 90 100
ENTFPEISEF AKSMIETLKE HLPITIDGEI VSLTNRFRSR FEYVQKRGLS
110 120 130 140 150
KKAELIAQAA AKKPCQYLAF DLLVFNGESL TSLPYTERKR MLFDLMKELG
160 170 180 190 200
LPMAPDPMAH ARIQYIPDTS DFHDLWKAVK RFDGEGIVAK KKDSRWAENK
210 220 230 240 250
KTAEWLKLKN YKKAAVFMTG YNMANRYLTI AVYDRGQIKE VGSVSHGLGE
260 270 280 290 300
QERNAILSIV KQYGTETKPG EYTIDPSICM TVHYLTIHYG TLREVSFVSF
310 320 330 340 350
EFDMAWENCT YNRLLLHSRN VHPDLQLTSL DKVIFPKSDK TKADYIGYLN
360 370 380 390 400
EIGDFLLPFL DNRALTVIRY PHGSGGESFF QKNKPDYAPE FITSIRDDEH
410 420 430 440 450
EHIICSDYSV LLWLANQLAL EFHIPFQTVD TAHPTEIVFD LDPPSKSEFP
460 470 480 490 500
LAVRAAKELH RLFDQLGLLS FPKLSGNKGI QIYIPISKNA FTYEETRLFT
510 520 530 540 550
SFAASYCVSL FPDLFTTERL IKNRGGKLYI DYVQHAPGKT IICPYSTRGN
560 570 580 590 600
ELGTVAAPLF WDEVHSDLSP LNFTMEAVVK RTKELGCPFE SFFRQPQDKQ
610
IKAILDHLKE NNRSEN
Length:616
Mass (Da):70,285
Last modified:October 25, 2004 - v1
Checksum:iFD039A1032B1ABED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000002 Genomic DNA. Translation: AAU23040.1.
RefSeqiWP_003181029.1. NC_006322.1.
YP_006712876.1. NC_006322.1.
YP_078678.1. NC_006270.3.

Genome annotation databases

EnsemblBacteriaiAAU23040; AAU23040; BL03626.
AAU40395; AAU40395; BLi01494.
GeneIDi3030566.
KEGGibld:BLi01494.
bli:BL03626.
PATRICi18948571. VBIBacLic203714_1489.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000002 Genomic DNA. Translation: AAU23040.1.
RefSeqiWP_003181029.1. NC_006322.1.
YP_006712876.1. NC_006322.1.
YP_078678.1. NC_006270.3.

3D structure databases

ProteinModelPortaliQ65KL9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi279010.BL03626.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAU23040; AAU23040; BL03626.
AAU40395; AAU40395; BLi01494.
GeneIDi3030566.
KEGGibld:BLi01494.
bli:BL03626.
PATRICi18948571. VBIBacLic203714_1489.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000008893.
KOiK01971.
OMAiMISSPDK.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBLIC279010:GJ2P-1486-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46Imported.

Entry informationi

Entry nameiQ65KL9_BACLD
AccessioniPrimary (citable) accession number: Q65KL9
Secondary accession number(s): Q62W18
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: May 27, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.