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Q65KL9 (Q65KL9_BACLD) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

ATP-dependent DNA ligase YkoU EMBL AAU40395.1
EC=6.5.1.1 EMBL AAU40395.1
Gene names
Name:ykoU EMBL AAU40395.1
Ordered Locus Names:BL03626 EMBL AAU23040.1, BLi01494 EMBL AAU40395.1
OrganismBacillus licheniformis (strain DSM 13 / ATCC 14580) [Complete proteome] [HAMAP] EMBL AAU40395.1
Taxonomic identifier279010 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length616 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AAU40395.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q65KL9 [UniParc].

Last modified October 25, 2004. Version 1.
Checksum: FD039A1032B1ABED

FASTA61670,285
        10         20         30         40         50         60 
MGITMQPVLT TSAPSGGNWR YEVKYDGYRG LLKIAATGEV SLISRNSQPL ENTFPEISEF 

        70         80         90        100        110        120 
AKSMIETLKE HLPITIDGEI VSLTNRFRSR FEYVQKRGLS KKAELIAQAA AKKPCQYLAF 

       130        140        150        160        170        180 
DLLVFNGESL TSLPYTERKR MLFDLMKELG LPMAPDPMAH ARIQYIPDTS DFHDLWKAVK 

       190        200        210        220        230        240 
RFDGEGIVAK KKDSRWAENK KTAEWLKLKN YKKAAVFMTG YNMANRYLTI AVYDRGQIKE 

       250        260        270        280        290        300 
VGSVSHGLGE QERNAILSIV KQYGTETKPG EYTIDPSICM TVHYLTIHYG TLREVSFVSF 

       310        320        330        340        350        360 
EFDMAWENCT YNRLLLHSRN VHPDLQLTSL DKVIFPKSDK TKADYIGYLN EIGDFLLPFL 

       370        380        390        400        410        420 
DNRALTVIRY PHGSGGESFF QKNKPDYAPE FITSIRDDEH EHIICSDYSV LLWLANQLAL 

       430        440        450        460        470        480 
EFHIPFQTVD TAHPTEIVFD LDPPSKSEFP LAVRAAKELH RLFDQLGLLS FPKLSGNKGI 

       490        500        510        520        530        540 
QIYIPISKNA FTYEETRLFT SFAASYCVSL FPDLFTTERL IKNRGGKLYI DYVQHAPGKT 

       550        560        570        580        590        600 
IICPYSTRGN ELGTVAAPLF WDEVHSDLSP LNFTMEAVVK RTKELGCPFE SFFRQPQDKQ 

       610 
IKAILDHLKE NNRSEN 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species."
Rey M.W., Ramaiya P., Nelson B.A., Brody-Karpin S.D., Zaretsky E.J., Tang M., Lopez de Leon A., Xiang H., Gusti V., Clausen I.G., Olsen P.B., Rasmussen M.D., Andersen J.T., Jorgensen P.L., Larsen T.S., Sorokin A., Bolotin A., Lapidus A. expand/collapse author list , Galleron N., Ehrlich S.D., Berka R.M.
Genome Biol. 5:R77.1-R77.12(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 14580 EMBL AAU23040.1 and DSM 13 / ATCC 14580 [Novozymes].
[2]"The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential."
Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P., Baumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G.
J. Mol. Microbiol. Biotechnol. 7:204-211(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 13 EMBL AAU40395.1 and DSM 13 / ATCC 14580 [Goettingen].
[3]Berka R.M., Rey M.W., Ramaiya P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 14580.
[4]Wiegand S., Hertel R., Dietrich S., Volland S., Liesegang H.
Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 13 EMBL AAU40395.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000002 Genomic DNA. Translation: AAU23040.1.
AE017333 Genomic DNA. Translation: AAU40395.1.
RefSeqYP_006712876.1. NC_006322.1.
YP_078678.1. NC_006270.3.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING279010.BL03626.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU23040; AAU23040; BL03626.
AAU40395; AAU40395; BLi01494.
GeneID3030566.
3098892.
KEGGbld:BLi01494.
bli:BL03626.
PATRIC18948571. VBIBacLic203714_1489.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000008893.
KOK01971.
OMADWTIRSI.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycBLIC279010:GJ2P-1486-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ65KL9_BACLD
AccessionPrimary (citable) accession number: Q65KL9
Secondary accession number(s): Q62W18
Entry history
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: July 9, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)