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Q65H24

- Q65H24_BACLD

UniProt

Q65H24 - Q65H24_BACLD

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Protein

RNA polymerase sigma factor

Gene
spoIIIC, sigK, BL02107, BLi02769
Organism
Bacillus licheniformis (strain DSM 13 / ATCC 14580)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity.UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
  2. sporulation resulting in formation of a cellular spore Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciBLIC279010:GJ2P-2746-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:spoIIICImported
Synonyms:sigKImported
Ordered Locus Names:BL02107Imported, BLi02769Imported
OrganismiBacillus licheniformis (strain DSM 13 / ATCC 14580)Imported
Taxonomic identifieri279010 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000000608: Chromosome, UP000000606: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi279010.BL02107.

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1191.
HOGENOMiHOG000270274.
KOiK03091.
OMAiNEICLID.
OrthoDBiEOG6NGVQ7.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR014209. RNA_pol_sigma-K.
IPR016263. RNA_pol_sigma-SigE/K.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
TIGR02846. spore_sigmaK. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q65H24-1 [UniParc]FASTAAdd to Basket

« Hide

MTGVFAALGY VIKELVFLVS YVKNNAFPQP LSSSDEKKYL ELMAQGDEHA    50
RNMLIEHNLR LVAHIVKKFE NTGEDAEDLI SIGTIGLIKA IESYSAGKGT 100
KLATYAARCI ENEILMHLRA LKKTKKDVSL HDPIGQDKEG NEISLIDVLK 150
SENEDVIDTI QLNMELEKVK KYIDILDGRE KEVIVGRFGL DLKKEKTQRE 200
IAKELGISRS YVSRIEKRAL MKMFHEFYRA EKEKRKKAKG K 241
Length:241
Mass (Da):27,456
Last modified:October 25, 2004 - v1
Checksum:i95B5E9B00F4A15E3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000002 Genomic DNA. Translation: AAU24280.1.
AE017333 Genomic DNA. Translation: AAU41640.1.
RefSeqiYP_006714113.1. NC_006322.1.
YP_079918.1. NC_006270.3.

Genome annotation databases

EnsemblBacteriaiAAU24280; AAU24280; BL02107.
AAU41640; AAU41640; BLi02769.
GeneIDi3028094.
3097872.
KEGGibld:BLi02769.
bli:BL02107.
PATRICi18951232. VBIBacLic203714_2817.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000002 Genomic DNA. Translation: AAU24280.1 .
AE017333 Genomic DNA. Translation: AAU41640.1 .
RefSeqi YP_006714113.1. NC_006322.1.
YP_079918.1. NC_006270.3.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 279010.BL02107.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAU24280 ; AAU24280 ; BL02107 .
AAU41640 ; AAU41640 ; BLi02769 .
GeneIDi 3028094.
3097872.
KEGGi bld:BLi02769.
bli:BL02107.
PATRICi 18951232. VBIBacLic203714_2817.

Phylogenomic databases

eggNOGi COG1191.
HOGENOMi HOG000270274.
KOi K03091.
OMAi NEICLID.
OrthoDBi EOG6NGVQ7.

Enzyme and pathway databases

BioCyci BLIC279010:GJ2P-2746-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR014209. RNA_pol_sigma-K.
IPR016263. RNA_pol_sigma-SigE/K.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view ]
PIRSFi PIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSi PR00046. SIGMA70FCT.
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
TIGR02846. spore_sigmaK. 1 hit.
PROSITEi PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14580Imported and DSM 13 / ATCC 14580 [Novozymes].
  2. "The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential."
    Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P., Baumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G.
    J. Mol. Microbiol. Biotechnol. 7:204-211(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 13Imported and DSM 13 / ATCC 14580 [Goettingen].
  3. Berka R.M., Rey M.W., Ramaiya P.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 14580.
  4. Wiegand S., Hertel R., Dietrich S., Volland S., Liesegang H.
    Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DSM 13Imported.

Entry informationi

Entry nameiQ65H24_BACLD
AccessioniPrimary (citable) accession number: Q65H24
Secondary accession number(s): Q62SH9
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: July 9, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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