Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q65H24 (Q65H24_BACLD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000715
Gene names
Name:spoIIIC EMBL AAU41640.1
Synonyms:sigK EMBL AAU24280.1
Ordered Locus Names:BL02107 EMBL AAU24280.1, BLi02769 EMBL AAU41640.1
OrganismBacillus licheniformis (strain DSM 13 / ATCC 14580) [Complete proteome] [HAMAP] EMBL AAU41640.1
Taxonomic identifier279010 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length241 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715

Sequences

Sequence LengthMass (Da)Tools
Q65H24 [UniParc].

Last modified October 25, 2004. Version 1.
Checksum: 95B5E9B00F4A15E3

FASTA24127,456
        10         20         30         40         50         60 
MTGVFAALGY VIKELVFLVS YVKNNAFPQP LSSSDEKKYL ELMAQGDEHA RNMLIEHNLR 

        70         80         90        100        110        120 
LVAHIVKKFE NTGEDAEDLI SIGTIGLIKA IESYSAGKGT KLATYAARCI ENEILMHLRA 

       130        140        150        160        170        180 
LKKTKKDVSL HDPIGQDKEG NEISLIDVLK SENEDVIDTI QLNMELEKVK KYIDILDGRE 

       190        200        210        220        230        240 
KEVIVGRFGL DLKKEKTQRE IAKELGISRS YVSRIEKRAL MKMFHEFYRA EKEKRKKAKG 


K 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species."
Rey M.W., Ramaiya P., Nelson B.A., Brody-Karpin S.D., Zaretsky E.J., Tang M., Lopez de Leon A., Xiang H., Gusti V., Clausen I.G., Olsen P.B., Rasmussen M.D., Andersen J.T., Jorgensen P.L., Larsen T.S., Sorokin A., Bolotin A., Lapidus A. expand/collapse author list , Galleron N., Ehrlich S.D., Berka R.M.
Genome Biol. 5:R77.1-R77.12(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 14580 EMBL AAU24280.1 and DSM 13 / ATCC 14580 [Novozymes].
[2]"The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential."
Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P., Baumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G.
J. Mol. Microbiol. Biotechnol. 7:204-211(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 13 EMBL AAU41640.1 and DSM 13 / ATCC 14580 [Goettingen].
[3]Berka R.M., Rey M.W., Ramaiya P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 14580.
[4]Wiegand S., Hertel R., Dietrich S., Volland S., Liesegang H.
Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSM 13 EMBL AAU41640.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000002 Genomic DNA. Translation: AAU24280.1.
AE017333 Genomic DNA. Translation: AAU41640.1.
RefSeqYP_006714113.1. NC_006322.1.
YP_079918.1. NC_006270.3.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING279010.BL02107.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU24280; AAU24280; BL02107.
AAU41640; AAU41640; BLi02769.
GeneID3028094.
3097872.
KEGGbld:BLi02769.
bli:BL02107.
PATRIC18951232. VBIBacLic203714_2817.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1191.
HOGENOMHOG000270274.
KOK03091.
OMAKVQLKIE.
OrthoDBEOG6NGVQ7.
ProtClustDBPRK05803.

Enzyme and pathway databases

BioCycBLIC279010:GJ2P-2746-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR014209. RNA_pol_sigma-K.
IPR016263. RNA_pol_sigma-SigE/K.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsTIGR02937. sigma70-ECF. 1 hit.
TIGR02846. spore_sigmaK. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ65H24_BACLD
AccessionPrimary (citable) accession number: Q65H24
Secondary accession number(s): Q62SH9
Entry history
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: April 16, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)