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Q65H24

- Q65H24_BACLD

UniProt

Q65H24 - Q65H24_BACLD

Protein

RNA polymerase sigma factor

Gene

spoIIIC

Organism
Bacillus licheniformis (strain DSM 13 / ATCC 14580)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 1 (25 Oct 2004)
      Previous versions | rss
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    Functioni

    Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro
    2. sporulation resulting in formation of a cellular spore Source: InterPro

    Keywords - Molecular functioni

    Sigma factorUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciBLIC279010:GJ2P-2746-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA polymerase sigma factorUniRule annotation
    Gene namesi
    Name:spoIIICImported
    Synonyms:sigKImported
    Ordered Locus Names:BL02107Imported, BLi02769Imported
    OrganismiBacillus licheniformis (strain DSM 13 / ATCC 14580)Imported
    Taxonomic identifieri279010 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000000606: Chromosome, UP000000608: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi279010.BL02107.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the sigma-70 factor family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1191.
    HOGENOMiHOG000270274.
    KOiK03091.
    OMAiNEICLID.
    OrthoDBiEOG6NGVQ7.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR014209. RNA_pol_sigma-K.
    IPR016263. RNA_pol_sigma-SigE/K.
    IPR000943. RNA_pol_sigma70.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
    PRINTSiPR00046. SIGMA70FCT.
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
    TIGR02846. spore_sigmaK. 1 hit.
    PROSITEiPS00715. SIGMA70_1. 1 hit.
    PS00716. SIGMA70_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q65H24-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTGVFAALGY VIKELVFLVS YVKNNAFPQP LSSSDEKKYL ELMAQGDEHA    50
    RNMLIEHNLR LVAHIVKKFE NTGEDAEDLI SIGTIGLIKA IESYSAGKGT 100
    KLATYAARCI ENEILMHLRA LKKTKKDVSL HDPIGQDKEG NEISLIDVLK 150
    SENEDVIDTI QLNMELEKVK KYIDILDGRE KEVIVGRFGL DLKKEKTQRE 200
    IAKELGISRS YVSRIEKRAL MKMFHEFYRA EKEKRKKAKG K 241
    Length:241
    Mass (Da):27,456
    Last modified:October 25, 2004 - v1
    Checksum:i95B5E9B00F4A15E3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000002 Genomic DNA. Translation: AAU24280.1.
    AE017333 Genomic DNA. Translation: AAU41640.1.
    RefSeqiYP_006714113.1. NC_006322.1.
    YP_079918.1. NC_006270.3.

    Genome annotation databases

    EnsemblBacteriaiAAU24280; AAU24280; BL02107.
    AAU41640; AAU41640; BLi02769.
    GeneIDi3028094.
    3097872.
    KEGGibld:BLi02769.
    bli:BL02107.
    PATRICi18951232. VBIBacLic203714_2817.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000002 Genomic DNA. Translation: AAU24280.1 .
    AE017333 Genomic DNA. Translation: AAU41640.1 .
    RefSeqi YP_006714113.1. NC_006322.1.
    YP_079918.1. NC_006270.3.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 279010.BL02107.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAU24280 ; AAU24280 ; BL02107 .
    AAU41640 ; AAU41640 ; BLi02769 .
    GeneIDi 3028094.
    3097872.
    KEGGi bld:BLi02769.
    bli:BL02107.
    PATRICi 18951232. VBIBacLic203714_2817.

    Phylogenomic databases

    eggNOGi COG1191.
    HOGENOMi HOG000270274.
    KOi K03091.
    OMAi NEICLID.
    OrthoDBi EOG6NGVQ7.

    Enzyme and pathway databases

    BioCyci BLIC279010:GJ2P-2746-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR014209. RNA_pol_sigma-K.
    IPR016263. RNA_pol_sigma-SigE/K.
    IPR000943. RNA_pol_sigma70.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
    PRINTSi PR00046. SIGMA70FCT.
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    TIGR02846. spore_sigmaK. 1 hit.
    PROSITEi PS00715. SIGMA70_1. 1 hit.
    PS00716. SIGMA70_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 14580Imported and DSM 13 / ATCC 14580 [Goettingen].
    2. "The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential."
      Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P., Baeumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G.
      J. Mol. Microbiol. Biotechnol. 7:204-211(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 13Imported, DSM 13 / ATCC 14580 [Goettingen]Imported and DSM 13 / ATCC 14580 [Novozymes]Imported.
    3. Berka R.M., Rey M.W., Ramaiya P.
      Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: ATCC 14580.
    4. Wiegand S., Hertel R., Dietrich S., Volland S., Liesegang H.
      Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: DSM 13Imported.

    Entry informationi

    Entry nameiQ65H24_BACLD
    AccessioniPrimary (citable) accession number: Q65H24
    Secondary accession number(s): Q62SH9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 25, 2004
    Last sequence update: October 25, 2004
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3