Q65H24 (Q65H24_BACLD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Name:	spoIIIC EMBL AAU41640.1
Synonyms:	sigK EMBL AAU24280.1
Ordered Locus Names:	BL02107, BLi02769 EMBL AAU41640.1

Organism

Bacillus licheniformis (strain DSM 13 / ATCC 14580) [Complete proteome] [HAMAP] EMBL AAU41640.1

Taxonomic identifier

279010 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus subtilis group › Bacillus licheniformis

Protein attributes

Sequence length	241 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS007627
Molecular function	Sigma factor RuleBase RU000715 SAAS SAAS007627
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro sporulation resulting in formation of a cellular spore Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q65H24 [UniParc]. Last modified October 25, 2004. Version 1. Checksum: 95B5E9B00F4A15E3	FASTA	241	27,456
	10 20 30 40 50 60 MTGVFAALGY VIKELVFLVS YVKNNAFPQP LSSSDEKKYL ELMAQGDEHA RNMLIEHNLR 70 80 90 100 110 120 LVAHIVKKFE NTGEDAEDLI SIGTIGLIKA IESYSAGKGT KLATYAARCI ENEILMHLRA 130 140 150 160 170 180 LKKTKKDVSL HDPIGQDKEG NEISLIDVLK SENEDVIDTI QLNMELEKVK KYIDILDGRE 190 200 210 220 230 240 KEVIVGRFGL DLKKEKTQRE IAKELGISRS YVSRIEKRAL MKMFHEFYRA EKEKRKKAKG K

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species." Rey M.W., Ramaiya P., Nelson B.A., Brody-Karpin S.D., Zaretsky E.J., Tang M., Lopez de Leon A., Xiang H., Gusti V., Clausen I.G., Olsen P.B., Rasmussen M.D., Andersen J.T., Joergensen P.L., Larsen T.S., Sorokin A., Bolotin A., Lapidus A. , Galleron N., Ehrlich S.D., Berka R.M. Genome Biol. 5:R77.1-R77.12(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 13 / ATCC 14580 [Novozymes].
[2]	"The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential." Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P., Baumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G. J. Mol. Microbiol. Biotechnol. 7:204-211(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 13 EMBL AAU41640.1 and DSM 13 / ATCC 14580 [Goettingen].
[3]	Wiegand S., Hertel R., Dietrich S., Volland S., Liesegang H. Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: DSM 13 EMBL AAU41640.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000002 Genomic DNA. Translation: AAU24280.1. AE017333 Genomic DNA. Translation: AAU41640.1.
RefSeq	YP_006714113.1. NC_006322.1. YP_079918.1. NC_006270.3.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	279010.BL02107.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAU24280; AAU24280; BL02107. AAU41640; AAU41640; BLi02769.
GeneID	3028094. 3097872.
KEGG	bld:BLi02769. bli:BL02107.
PATRIC	18951232. VBIBacLic203714_2817.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1191.
HOGENOM	HOG000270274.
KO	K03091.
OMA	FENTGEE.
ProtClustDB	PRK05803.
Enzyme and pathway databases
BioCyc	BLIC279010:GJ2P-2746-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR014209. RNA_pol_sigma-K. IPR016263. RNA_pol_sigma-SigE/K. IPR000943. RNA_pol_sigma70. IPR007627. RNA_pol_sigma70_r2. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PIRSF	PIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02937. sigma70-ECF. 1 hit. TIGR02846. spore_sigmaK. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q65H24_BACLD

Accession

Primary (citable) accession number: Q65H24
Secondary accession number(s): Q62SH9

Entry history

Integrated into UniProtKB/TrEMBL:	October 25, 2004
Last sequence update:	October 25, 2004
Last modified:	May 1, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)