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Q65GG2

- RNPH_BACLD

UniProt

Q65GG2 - RNPH_BACLD

Protein

Ribonuclease PH

Gene

rph

Organism
Bacillus licheniformis (strain DSM 13 / ATCC 14580)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (25 Oct 2004)
      Previous versions | rss
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    Functioni

    Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates.UniRule annotation

    Catalytic activityi

    tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate.UniRule annotation

    GO - Molecular functioni

    1. tRNA binding Source: InterPro
    2. tRNA nucleotidyltransferase activity Source: UniProtKB-EC
    3. tRNA-specific ribonuclease activity Source: InterPro

    GO - Biological processi

    1. tRNA processing Source: UniProtKB-KW

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    tRNA processing

    Enzyme and pathway databases

    BioCyciBLIC279010:GJ2P-2960-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease PHUniRule annotation (EC:2.7.7.56UniRule annotation)
    Short name:
    RNase PHUniRule annotation
    Alternative name(s):
    tRNA nucleotidyltransferaseUniRule annotation
    Gene namesi
    Name:rphUniRule annotation
    Ordered Locus Names:BLi02985, BL00312
    OrganismiBacillus licheniformis (strain DSM 13 / ATCC 14580)
    Taxonomic identifieri279010 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000000606: Chromosome, UP000000608: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 246246Ribonuclease PHPRO_1000024777Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi279010.BL00312.

    Structurei

    3D structure databases

    ProteinModelPortaliQ65GG2.
    SMRiQ65GG2. Positions 1-239.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNase PH family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0689.
    HOGENOMiHOG000229516.
    KOiK00989.
    OrthoDBiEOG6CZQQP.

    Family and domain databases

    Gene3Di3.30.230.70. 1 hit.
    HAMAPiMF_00564. RNase_PH.
    InterProiIPR001247. ExoRNase_PH_dom1.
    IPR015847. ExoRNase_PH_dom2.
    IPR027408. PNPase/RNase_PH_dom.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR002381. RNase_PH_bac-type.
    IPR018336. RNase_PH_CS.
    [Graphical view]
    PfamiPF01138. RNase_PH. 1 hit.
    PF03725. RNase_PH_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF54211. SSF54211. 1 hit.
    SSF55666. SSF55666. 1 hit.
    TIGRFAMsiTIGR01966. RNasePH. 1 hit.
    PROSITEiPS01277. RIBONUCLEASE_PH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q65GG2-1 [UniParc]FASTAAdd to Basket

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    MRYDGRKNNE LRPVTMDLDF ITHPEGSVLI TVGGTKVICN ASVEDRVPPF    50
    LRGEGKGWIT AEYSMLPRAT NQRTIRESSK GKISGRTMEI QRLIGRALRA 100
    VVDLEKLGER TIWIDCDVIQ ADGGTRTASI TGAFTAMALA VGRLVEKGAL 150
    KEMPITDFLA ATSVGIDKEK GLILDLNYQE DSAAEVDMNV VMTGEGRFVE 200
    LQGTGEEATF SRSELDGLLE LAEKGIAELL EKQKEVLGDV ALSIQQ 246
    Length:246
    Mass (Da):26,845
    Last modified:October 25, 2004 - v1
    Checksum:i86BFDAD5A433B890
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000002 Genomic DNA. Translation: AAU24491.2.
    AE017333 Genomic DNA. Translation: AAU41852.1.
    RefSeqiYP_006714322.1. NC_006322.1.
    YP_080129.2. NC_006270.3.

    Genome annotation databases

    EnsemblBacteriaiAAU24491; AAU24491; BL00312.
    AAU41852; AAU41852; BLi02985.
    GeneIDi3028501.
    3098495.
    KEGGibld:BLi02985.
    bli:BL00312.
    PATRICi18951694. VBIBacLic203714_3047.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000002 Genomic DNA. Translation: AAU24491.2 .
    AE017333 Genomic DNA. Translation: AAU41852.1 .
    RefSeqi YP_006714322.1. NC_006322.1.
    YP_080129.2. NC_006270.3.

    3D structure databases

    ProteinModelPortali Q65GG2.
    SMRi Q65GG2. Positions 1-239.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 279010.BL00312.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAU24491 ; AAU24491 ; BL00312 .
    AAU41852 ; AAU41852 ; BLi02985 .
    GeneIDi 3028501.
    3098495.
    KEGGi bld:BLi02985.
    bli:BL00312.
    PATRICi 18951694. VBIBacLic203714_3047.

    Phylogenomic databases

    eggNOGi COG0689.
    HOGENOMi HOG000229516.
    KOi K00989.
    OrthoDBi EOG6CZQQP.

    Enzyme and pathway databases

    BioCyci BLIC279010:GJ2P-2960-MONOMER.

    Family and domain databases

    Gene3Di 3.30.230.70. 1 hit.
    HAMAPi MF_00564. RNase_PH.
    InterProi IPR001247. ExoRNase_PH_dom1.
    IPR015847. ExoRNase_PH_dom2.
    IPR027408. PNPase/RNase_PH_dom.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    IPR002381. RNase_PH_bac-type.
    IPR018336. RNase_PH_CS.
    [Graphical view ]
    Pfami PF01138. RNase_PH. 1 hit.
    PF03725. RNase_PH_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54211. SSF54211. 1 hit.
    SSF55666. SSF55666. 1 hit.
    TIGRFAMsi TIGR01966. RNasePH. 1 hit.
    PROSITEi PS01277. RIBONUCLEASE_PH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential."
      Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P., Baeumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G.
      J. Mol. Microbiol. Biotechnol. 7:204-211(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 13 / ATCC 14580.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 13 / ATCC 14580.

    Entry informationi

    Entry nameiRNPH_BACLD
    AccessioniPrimary (citable) accession number: Q65GG2
    Secondary accession number(s): Q62RW9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: October 25, 2004
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3