Reviewed, UniProtKB/Swiss-Prot Q65GC1 (ARAB_BACLD)

Names and origin

Protein names

Recommended name:
    Ribulokinase
    EC=2.7.1.16

Gene names

Name:	araB
Ordered Locus Names:	BLi03027, BL00351

Organism

Bacillus licheniformis (strain DSM 13 / ATCC 14580) [Complete proteome] [HAMAP]

Taxonomic identifier

279010 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	552 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520
Sequence similarities	Belongs to the ribulokinase family.

Ontologies

Keywords
Biological process	Arabinose catabolism Carbohydrate metabolism
Ligand	ATP-binding Nucleotide-binding
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 552	552	Ribulokinase HAMAP MF_00520		PRO_0000263399

Sequences

	Sequence		Length	Mass (Da)
	Q65GC1-1 [UniParc]. Last modified October 25, 2004. Version 1. Checksum: DDCA67A3217AB16F	FASTA	552	60,583
	10 20 30 40 50 60 MSGRAVLVDV RTGEEIATAV KEYTHGVIDR ELPVSKRKLP RDWALQHPAD YIEVLEETIP 70 80 90 100 110 120 SLLKQSKADP KEIIGIGIDF TACTILPVDE NGTPLCMREE YASEPHSYVK LWKHHAAQEQ 130 140 150 160 170 180 ANRLNQIAEE RNEPFLQTYG GKISSEWLVP KVMQIAEEAP DIYDAAAEIM EAADWIVYML 190 200 210 220 230 240 CGTRKRNNCT AGYKAIWNNK SGYPSDDFFA SLHPKLKNIV REKLTEDIYS VGEKAGGLTE 250 260 270 280 290 300 EMAGKTGLLA GTAVAVANVD AHVSVPAVGI TEPGKMLMIM GTSTCHMLLG EDVRMVPGMC 310 320 330 340 350 360 GVVEDGILPG YVGYEAGQSC VGDHFHWLIQ HFVPEAYLKE AEAEGISIYE LLSQKAGSLQ 370 380 390 400 410 420 IGESGLLALD WWNGNRSTLV DADLTGMLLG MTLATKPEEI YRALVEATAY GTRIIIETFR 430 440 450 460 470 480 QSGVPIEELY AAGGIAEKNP FIMQVYADVT NMEIKISGSP QAPALGSAIF GALAAGSMNG 490 500 510 520 530 540 GYDHIEEAVA HMGKIKDKTY KPIPENVSLY DQLYAEYKEL YTYFGKQNNV MKRLKKLKNI 550 QSLSSDTGKA MA

References

[1]

"The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential." Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P., Baeumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G. J. Mol. Microbiol. Biotechnol. 7:204-211(2004) [PubMed: 15383718] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species." Rey M.W., Ramaiya P., Nelson B.A., Brody-Karpin S.D., Zaretsky E.J., Tang M., Lopez de Leon A., Xiang H., Gusti V., Clausen I.G., Olsen P.B., Rasmussen M.D., Andersen J.T., Joergensen P.L., Larsen T.S., Sorokin A., Bolotin A., Lapidus A. , Galleron N., Ehrlich S.D., Berka R.M. Genome Biol. 5:RESEARCH077.1-RESEARCH077.12(2004) [PubMed: 15461803] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE017333 Genomic DNA. Translation: AAU41893.1. CP000002 Genomic DNA. Translation: AAU24534.1.
RefSeq	YP_080172.1. YP_092586.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q65GC1.
Genome annotation databases
GeneID	3029042. 3098583.
GenomeReviews	Gene locus BLi03027 in contig AE017333_GR. Gene locus BL00351 in contig CP000002_GR.
KEGG	bld:BLi03027. bli:BL00351.
NMPDR	fig|279010.5.peg.3375.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q65GC1.
OMA	EATAYGT.
Enzyme and pathway databases
BioCyc	BLIC279010:BL00351-MON.
Family and domain databases
HAMAP	MF_00520. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

ARAB_BACLD

Accession

Primary (citable) accession number: Q65GC1
Secondary accession number(s): Q62RS6

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 12, 2006
Last sequence update:	October 25, 2004
Last modified:	November 3, 2009
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)