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Protein
Submitted name:

ABC membrane transporter (ATP-binding protein)

Gene

cydD

Organism
Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

ATP-bindingUniRule annotationImported, Nucleotide-binding

Enzyme and pathway databases

BioCyciBLIC279010:GJ2P-4085-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ABC membrane transporter (ATP-binding protein)Imported
Gene namesi
Name:cydDImported
Ordered Locus Names:BL00926Imported
OrganismiBacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46)Imported
Taxonomic identifieri279010 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000000606 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei18 – 4326HelicalSequence analysisAdd
BLAST
Transmembranei55 – 7319HelicalSequence analysisAdd
BLAST
Transmembranei136 – 15823HelicalSequence analysisAdd
BLAST
Transmembranei164 – 18219HelicalSequence analysisAdd
BLAST
Transmembranei247 – 26620HelicalSequence analysisAdd
BLAST
Transmembranei272 – 29322HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi279010.BLi04131.

Structurei

3D structure databases

ProteinModelPortaliQ65DC0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini20 – 307288ABC transmembrane type-1InterPro annotationAdd
BLAST
Domaini341 – 574234ABC transporterInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transporter domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4108JJ8. Bacteria.
COG4987. LUCA.
KOiK16012.
OMAiILWITHH.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR014223. ABC_CydC.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 2 hits.
TIGRFAMsiTIGR02868. CydC. 1 hit.
PROSITEiPS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q65DC0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNEDGWILP YIKKNTRLLI IVVLLGGLTA CSAAALMFTS GYLISKAATR
60 70 80 90 100
PENVLMIYVP IVAVRTFGIL RSVSRYVERL TGHHIILKIL SDMRVRLYRM
110 120 130 140 150
LEPQALKWRE RFRTGDMLGI LADDVEHLQD MYLRTVFPGL SALLLYGVFI
160 170 180 190 200
AAIGFFSWPF AGLMAVYAAV FVFLVPLVSL LVTRAKNVAL KRGRSHLYRQ
210 220 230 240 250
LTDAVMGVSD WVFSGRQNDF VHSYEAAEHE WLAIEKKQVR FSRWRDFAMQ
260 270 280 290 300
CLAAGLVLLM LIWAGGQSAE GALAPVFIAA FVLVVFPLTE AFFPLSDAAA
310 320 330 340 350
SIPEYQDSLE RMDGLQPPKR GNGADVQQER AEAVGLDDVT LRFEDVSFSY
360 370 380 390 400
EQGQPVLDGV SFILKQGEKT ALLGPSGAGK STILSLIQGA LAPSKGNITL
410 420 430 440 450
NDISVQSLQG EISRVVSVFN QQPHLFDTTV LNNIRLGNPD ASDEDVYWAA
460 470 480 490 500
RQVKLHDYIQ SLPDGYHTSV QETGIRFSGG ERQRIALARI LLQDAPIVVL
510 520 530 540 550
DEPTVGLDPK TEKELLSTMF QVLDGKTVLW ITHHLAGAEA ADRILFLDKG
560 570 580
KLAMAGSHQQ LLENNPRYSR LYRLDAPVSR LF
Length:582
Mass (Da):64,679
Last modified:October 25, 2004 - v1
Checksum:iB08139EEF7A40887
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000002 Genomic DNA. Translation: AAU25570.1.
RefSeqiWP_003186390.1. NC_006322.1.

Genome annotation databases

EnsemblBacteriaiAAU25570; AAU25570; BL00926.
GeneIDi3027448.
KEGGibli:BL00926.
PATRICi18954080. VBIBacLic203714_4215.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000002 Genomic DNA. Translation: AAU25570.1.
RefSeqiWP_003186390.1. NC_006322.1.

3D structure databases

ProteinModelPortaliQ65DC0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi279010.BLi04131.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAU25570; AAU25570; BL00926.
GeneIDi3027448.
KEGGibli:BL00926.
PATRICi18954080. VBIBacLic203714_4215.

Phylogenomic databases

eggNOGiENOG4108JJ8. Bacteria.
COG4987. LUCA.
KOiK16012.
OMAiILWITHH.
OrthoDBiEOG6T7N3V.

Enzyme and pathway databases

BioCyciBLIC279010:GJ2P-4085-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR014223. ABC_CydC.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 2 hits.
TIGRFAMsiTIGR02868. CydC. 1 hit.
PROSITEiPS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46Imported.

Entry informationi

Entry nameiQ65DC0_BACLD
AccessioniPrimary (citable) accession number: Q65DC0
Secondary accession number(s): Q62NU1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: April 13, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.