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Protein

Endoglucanase 16

Gene

Os06g0247900

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei431 – 4311PROSITE-ProRule annotation
Active sitei483 – 4831PROSITE-ProRule annotation
Active sitei492 – 4921PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Cell wall biogenesis/degradation, Cellulose degradation, Polysaccharide degradation

Protein family/group databases

CAZyiGH9. Glycoside Hydrolase Family 9.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoglucanase 16 (EC:3.2.1.4)
Alternative name(s):
Endo-1,4-beta glucanase 16
Gene namesi
Ordered Locus Names:Os06g0247900, LOC_Os06g13830
ORF Names:OJ1136_C11.27
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 6

Organism-specific databases

GrameneiQ654U4.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2626Sequence AnalysisAdd
BLAST
Chaini27 – 538512Endoglucanase 16PRO_0000249293Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiQ654U4. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os06g13830.1.

Structurei

3D structure databases

ProteinModelPortaliQ654U4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGieuNOG00265.
InParanoidiQ654U4.
OMAiCTAAMEL.

Family and domain databases

Gene3Di1.50.10.10. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view]
PfamiPF00759. Glyco_hydro_9. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
PROSITEiPS00592. GLYCOSYL_HYDROL_F9_1. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q654U4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MRWRRVGDVV AVALLLGAAA AAAAAAARHD YEEALRKSLL YFEAQRSGRL
60 70 80 90 100
PHGQRVAWRD HSGLTDGLEQ GVDLVGGYYD AGDHVKFGLP MAFTVTMLSW
110 120 130 140 150
SLLEYGADVA AAGELAHALD AIKWGTDYFI KAHTKPHELW AEVGDGDTDH
160 170 180 190 200
YCWQRPEDMT TSRQAYKVDR RRPGSDVAGE TAAAMAAASI VFRQSNPHYS
210 220 230 240 250
HLLLHHAQQL FEFADTYRGK YDSSIAEVKS YYASVSGYHD ELLWAALWLH
260 270 280 290 300
RATGRAAYLD YAVDNADEFG GTGWAITEFS WDVKYAGVQI LAARLLMRGE
310 320 330 340 350
HEERHRGTLE RYREKAEHYV CACMGRNAAG GADANVERSP GGMLYVRQWN
360 370 380 390 400
NMQYVTNAAF LLSAYSDYLA GAGDGDGDGG GGVATCVGGG GAGAGEVFAA
410 420 430 440 450
AREQVDYVLG SNPRGMSYLV GYGERFPARV HHRAASIVPY KDSKEFIGCA
460 470 480 490 500
QGFDDWFGRR GANPNVVVGA IVGGPDRRDR FRDDRENYMQ TEACTYNTAP
510 520 530
MVGMFAMLNR LSRQESPSTT TTTTATTSSP EMGLSVNR
Note: Derived from EST data. No experimental confirmation available.
Length:538
Mass (Da):58,893
Last modified:September 5, 2006 - v2
Checksum:i94ED0101E3408692
GO
Isoform 2 (identifier: Q654U4-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-158: Missing.

Note: No experimental confirmation available.
Show »
Length:380
Mass (Da):41,530
Checksum:i3DE3C0B8934314A1
GO

Sequence cautioni

The sequence BAD45673.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAF19200.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 158158Missing in isoform 2. 1 PublicationVSP_020389Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP004027 Genomic DNA. Translation: BAD45673.1. Sequence problems.
AP008212 Genomic DNA. Translation: BAF19200.1. Sequence problems.
AK065325 mRNA. No translation available.
RefSeqiNP_001057286.1. NM_001063821.1.
UniGeneiOs.48095.

Genome annotation databases

GeneIDi4340645.
KEGGiosa:4340645.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP004027 Genomic DNA. Translation: BAD45673.1. Sequence problems.
AP008212 Genomic DNA. Translation: BAF19200.1. Sequence problems.
AK065325 mRNA. No translation available.
RefSeqiNP_001057286.1. NM_001063821.1.
UniGeneiOs.48095.

3D structure databases

ProteinModelPortaliQ654U4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os06g13830.1.

Protein family/group databases

CAZyiGH9. Glycoside Hydrolase Family 9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4340645.
KEGGiosa:4340645.

Organism-specific databases

GrameneiQ654U4.

Phylogenomic databases

eggNOGieuNOG00265.
InParanoidiQ654U4.
OMAiCTAAMEL.

Gene expression databases

ExpressionAtlasiQ654U4. baseline.

Family and domain databases

Gene3Di1.50.10.10. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR001701. Glyco_hydro_9.
IPR018221. Glyco_hydro_9_AS.
[Graphical view]
PfamiPF00759. Glyco_hydro_9. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
PROSITEiPS00592. GLYCOSYL_HYDROL_F9_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiGUN16_ORYSJ
AccessioniPrimary (citable) accession number: Q654U4
Secondary accession number(s): Q0DD73
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 5, 2006
Last sequence update: September 5, 2006
Last modified: June 24, 2015
This is version 55 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.