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Protein
Submitted name:

Alpha-amylase

Gene

BF3209

Organism
Bacteroides fragilis (strain YCH46)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei232 – 2321NucleophileUniRule annotation
Active sitei262 – 2621Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
Ordered Locus Names:BF3209Imported
OrganismiBacteroides fragilis (strain YCH46)Imported
Taxonomic identifieri295405 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
ProteomesiUP000002197 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliQ64RC7.
SMRiQ64RC7. Positions 2-480.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q64RC7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENGVMMQYF EWNLPNDGNL WKQLKEDASH LHEIGVTAVW IPPAYKADEQ
60 70 80 90 100
QDEGYATYDL YDLGEFDQKG TVRTKYGTKE ELKEMIDELH KNHISVYLDV
110 120 130 140 150
VLNHKAGGDF TEKFIVVEVD PNDRTQALGK PFEIQGWTGY SFHGRKDKCS
160 170 180 190 200
DFKWHWYHFS GTGFDDAKKR SGIFQIQGEG KAWSEGVDNE NGNYDFLLCN
210 220 230 240 250
DIDLDHPEVV TELNRWGKWV SKELNLDGMR LDAIKHMKDK FIAQFLDAVR
260 270 280 290 300
SERGDKFYAV GEYWNGDLNT LDAYIKSVGH KVNLFDVPLH YNLFQASQEG
310 320 330 340 350
KNYDLQNILK NTLVEHHCDL AVTFVDNHDS QSGSSLESQI EDWFKPLAYG
360 370 380 390 400
LILLIKDGYP CLFYGDYYGV KGENSPHTQI INILLDARRK YAYGDQIEYF
410 420 430 440 450
DHPSAIGFIR TGDEEHVGSG LVFLMSNDEA GSKKMDLGEE HKGEIWHEIT
460 470 480
GNIQQEITLD EKGSGEFSVN TRNIAVWIKK N
Length:481
Mass (Da):55,220
Last modified:October 25, 2004 - v1
Checksum:i212A3767727131DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006841 Genomic DNA. Translation: BAD49954.1.
RefSeqiWP_011203184.1. NC_006347.1.
YP_100488.1. NC_006347.1.

Genome annotation databases

EnsemblBacteriaiBAD49954; BAD49954; BF3209.
GeneIDi3083111.
KEGGibfr:BF3209.
PATRICi21051976. VBIBacFra17906_3077.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006841 Genomic DNA. Translation: BAD49954.1.
RefSeqiWP_011203184.1. NC_006347.1.
YP_100488.1. NC_006347.1.

3D structure databases

ProteinModelPortaliQ64RC7.
SMRiQ64RC7. Positions 2-480.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD49954; BAD49954; BF3209.
GeneIDi3083111.
KEGGibfr:BF3209.
PATRICi21051976. VBIBacFra17906_3077.

Phylogenomic databases

KOiK01176.
OMAiFFHWYYP.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation."
    Kuwahara T., Yamashita A., Hirakawa H., Nakayama H., Toh H., Okada N., Kuhara S., Hattori M., Hayashi T., Ohnishi Y.
    Proc. Natl. Acad. Sci. U.S.A. 101:14919-14924(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YCH46Imported.

Entry informationi

Entry nameiQ64RC7_BACFR
AccessioniPrimary (citable) accession number: Q64RC7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: June 24, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.