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Protein

Capsid protein

Gene
N/A
Organism
White clover cryptic virus 1 (isolate Boccardo/2004) (WCCV-1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

The capsid protein self-assembles to form an icosahedral capsid with a T=2 symmetry made of 120 subunits.By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Short name:
CP
Alternative name(s):
Coat protein
OrganismiWhite clover cryptic virus 1 (isolate Boccardo/2004) (WCCV-1)
Taxonomic identifieri654934 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesPartitiviridaeAlphapartitivirus
Virus hostiTrifolium repens (Creeping white clover) [TaxID: 3899]
Proteomesi
  • UP000001672 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, T=1 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004027931 – 487Capsid proteinAdd BLAST487

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi13 – 62Pro-richAdd BLAST50
Compositional biasi379 – 384Poly-Ala6

Sequencei

Sequence statusi: Complete.

Q64FN9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQDTPLANL NGPEVPSGNV PPANPPGRTN VAPPAQGAVQ QPPAPAARRA
60 70 80 90 100
RNPHGPVPPA GPSRSAGAPA MLELSAAYPM YTEQRRAPNY YVPDAQLLFH
110 120 130 140 150
TLGVCDQLMT TTDRFLRSMP SWLPIVSQLY VSVLWNVMIL KVYVNTGYGA
160 170 180 190 200
AYAHDLDVLL NHLQINECMI PGPLVPFFQS LAAVNGPFDW IGDIIPAMPS
210 220 230 240 250
FTELWTDEFA PHAAYARQIP IPAILLDQLY RFATLAFDAQ LQTNYATFEW
260 270 280 290 300
YSNIFNQDVN THNARLRLGP QLCGSLFTTQ AQCDSARAFW NPAFANGFTR
310 320 330 340 350
IDAANGPLMA FPQLLGFISQ DGALQSNWFM HISLIMHKYA QYFNGSVPLK
360 370 380 390 400
SISPVGIGAS VIYGTPLEDT NVRDWLYPAA AAIAPFRSTR FLPRRELPAT
410 420 430 440 450
LAVRFAHADH EIEEQAEQYS ILCHTNMKWY VNNATQNNHT AIEGNYIHQG
460 470 480
EYWNFTPFRY SPPVSLKTQF AQVIASRYHQ QAANRAE
Length:487
Mass (Da):54,163
Last modified:October 25, 2004 - v1
Checksum:iDBC0DF47EE1754CB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY705785 Genomic RNA. Translation: AAU14889.1.
RefSeqiYP_086755.1. NC_006276.1.

Genome annotation databases

GeneIDi5076438.
KEGGivg:5076438.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_WCCVB
AccessioniPrimary (citable) accession number: Q64FN9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2011
Last sequence update: October 25, 2004
Last modified: April 1, 2015
This is version 22 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome