Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Gag polyprotein

Gene

gag

Organism
Rous sarcoma virus - Schmidt-Ruppin D
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Gag polyproteinImported
Gene namesi
Name:gagImported
OrganismiRous sarcoma virus - Schmidt-Ruppin DImported
Taxonomic identifieri269448 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeAlpharetrovirus
Proteomesi
  • UP000159478 Componenti: Genome

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

VirionSAAS annotation

Interactioni

Protein-protein interaction databases

MINTiMINT-1524506.

Structurei

3D structure databases

ProteinModelPortaliQ64992.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini507 – 522CCHC-typeInterPro annotationAdd BLAST16
Domaini607 – 688Peptidase A2InterPro annotationAdd BLAST82

Keywords - Domaini

Zinc-fingerSAAS annotation

Family and domain databases

CDDicd05482. HIV_retropepsin_like. 1 hit.
Gene3Di1.10.1200.30. 1 hit.
1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
2.40.70.10. 1 hit.
4.10.60.10. 1 hit.
InterProiView protein in InterPro
IPR001969. Aspartic_peptidase_AS.
IPR004028. Gag_M.
IPR000721. Gag_p24.
IPR012344. Matrix_HIV/RSV.
IPR001995. Peptidase_A2_cat.
IPR021109. Peptidase_aspartic_dom.
IPR034170. Retropepsin-like_cat_dom.
IPR018061. Retropepsins.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
PfamiView protein in Pfam
PF00607. Gag_p24. 1 hit.
PF02813. Retro_M. 1 hit.
PF00077. RVP. 1 hit.
PF00098. zf-CCHC. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002871. Gag_M. 1 hit.
SMARTiView protein in SMART
SM00343. ZnF_C2HC. 2 hits.
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF50630. SSF50630. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiView protein in PROSITE
PS50175. ASP_PROT_RETROV. 1 hit.
PS00141. ASP_PROTEASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q64992-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAVIKVISS ACKTYCGKTS PSKKEIGAML SLLQKEGLLM SPSDLYSPGS
60 70 80 90 100
WDPITAALSQ RAMILGKSGE LKTWGLVLGA LKAAREEQVT SEQAKFWLGL
110 120 130 140 150
GGGRVSPPGP ECIEKPATER RIDKGEEVGE TTVQRDAKMA PEEAATPKTV
160 170 180 190 200
GTSCYHCGTA VGCNCATATA SAPPPPYVGS GLYPSLAGVG EQQGQGDRAE
210 220 230 240 250
QPREEPGHAG QAPGPALTDW ARVREELAST GPPVVAMPVV IKTEGPAWTP
260 270 280 290 300
LEPKLITRLA DTVRTKGLRS PITMAEVEAL MSSPLLPHDV TNLMRVILGP
310 320 330 340 350
APYALWMDAW GVQLQTVIAA ATRDPRHPAN GQGRGERTNL DRLKGLADGM
360 370 380 390 400
VGNPQGQAAL LRPGELVAIT ASALQAFREV ARLAEPAGPW ADITQGPSES
410 420 430 440 450
FVDFANRLIK AVEGSDLPPT ARAPVIIDCF RQKSQPDIQQ LIRAAPSTLT
460 470 480 490 500
TPGEIIKYVL DRQKTAPLTD QGIAAAMSSA IQPLVMAVVN RERDGQTGSG
510 520 530 540 550
GRARGLCYTC GSPGHYQAQC PKKRKSGNSR ERCQLCDGMG HNAKQCRKRD
560 570 580 590 600
GNQGQRPGRG LSSGPWPGPE QPAVSLAMTM EHKDRPLVRV ILTNTGSHPV
610 620 630 640 650
KQRSVYITAL LDSGADITII SEEDWPTDWP VVDTANPQIH GIGGGIPMRK
660 670 680 690
SRDMIELGVI NRDGSLERPL LLFPAVAMVR GSILGRDCLQ GLGLRLTNL
Length:699
Mass (Da):74,454
Last modified:November 1, 1996 - v1
Checksum:iE8B20DB51F010943
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10652 Genomic RNA. Translation: BAA01499.1.

Keywords - Coding sequence diversityi

Ribosomal frameshiftingSAAS annotation

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D10652 Genomic RNA. Translation: BAA01499.1.

3D structure databases

ProteinModelPortaliQ64992.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-1524506.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

CDDicd05482. HIV_retropepsin_like. 1 hit.
Gene3Di1.10.1200.30. 1 hit.
1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
2.40.70.10. 1 hit.
4.10.60.10. 1 hit.
InterProiView protein in InterPro
IPR001969. Aspartic_peptidase_AS.
IPR004028. Gag_M.
IPR000721. Gag_p24.
IPR012344. Matrix_HIV/RSV.
IPR001995. Peptidase_A2_cat.
IPR021109. Peptidase_aspartic_dom.
IPR034170. Retropepsin-like_cat_dom.
IPR018061. Retropepsins.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
PfamiView protein in Pfam
PF00607. Gag_p24. 1 hit.
PF02813. Retro_M. 1 hit.
PF00077. RVP. 1 hit.
PF00098. zf-CCHC. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002871. Gag_M. 1 hit.
SMARTiView protein in SMART
SM00343. ZnF_C2HC. 2 hits.
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF50630. SSF50630. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiView protein in PROSITE
PS50175. ASP_PROT_RETROV. 1 hit.
PS00141. ASP_PROTEASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ64992_RSVSR
AccessioniPrimary (citable) accession number: Q64992
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 15, 2017
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.