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Protein

Capsid protein

Gene

ORF5

Organism
Apple stem pitting virus (isolate PA66) (ASPV)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Short name:
CP
Alternative name(s):
Coat protein
Gene namesi
ORF Names:ORF5
OrganismiApple stem pitting virus (isolate PA66) (ASPV)
Taxonomic identifieri651356 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesBetaflexiviridaeFoveavirus
Virus hostiCrataegus (hawthorn) [TaxID: 23159]
Malus sieboldii [TaxID: 106566]
Malus sylvestris [TaxID: 3752]
Pyrus communis (Pear) (Pyrus domestica) [TaxID: 23211]
Proteomesi
  • UP000000678 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 414414Capsid proteinPRO_0000401084Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ64966.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi21 – 244Poly-Ala

Family and domain databases

InterProiIPR000052. Pltvir_coat.
[Graphical view]
PfamiPF00286. Flexi_CP. 1 hit.
[Graphical view]
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiPS00418. POTEX_CARLAVIRUS_COAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q64966-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSNGSQPQA STPMVSAEEP AAAASVPNST PMVSAEGPAA AVSAPNSSVV
60 70 80 90 100
SSAPASAPTA SEPVISQVQS LAPIVSGFDP NLHGRLTNEQ MRQAQNEAAM
110 120 130 140 150
QGYEEGSRRN PRLPSSTTAH NDYASMNSNP FETGTAYGGA PRVSFGSYPT
160 170 180 190 200
FPGSGSASEP NSQRIFPQQH GVNPPAHASD LVPHQATSGG NTGTPFTLGN
210 220 230 240 250
RAPRNATANT GGMRRRLDSV GLKNIRYEPQ AGVVASNQKI RAVGVALIGM
260 270 280 290 300
GIPEHQLTEV GVYLARHCAD VGASDKSALL GTFPGSDITL EEVGTMIKQT
310 320 330 340 350
EGCTLRQYCA FYAKHVWNLM LQTQSPPANW VGKEFKFETR YAAFDFFFGV
360 370 380 390 400
ESTASLEPAD GLIRLPTQAE RVANATSKEI QMYRIRSMEG TQAVNFGEVT
410
GGKIGPKPVL SIRK
Length:414
Mass (Da):43,712
Last modified:November 1, 1996 - v1
Checksum:i9483395C3F14D85E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D21829 Genomic RNA. Translation: BAA04857.1.
RefSeqiNP_604468.1. NC_003462.2.

Genome annotation databases

GeneIDi935269.
KEGGivg:935269.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D21829 Genomic RNA. Translation: BAA04857.1.
RefSeqiNP_604468.1. NC_003462.2.

3D structure databases

ProteinModelPortaliQ64966.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi935269.
KEGGivg:935269.

Family and domain databases

InterProiIPR000052. Pltvir_coat.
[Graphical view]
PfamiPF00286. Flexi_CP. 1 hit.
[Graphical view]
PRINTSiPR00232. POTXCARLCOAT.
PROSITEiPS00418. POTEX_CARLAVIRUS_COAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCAPSD_ASPVP
AccessioniPrimary (citable) accession number: Q64966
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 2, 2010
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.