ID PDE1C_MOUSE Reviewed; 706 AA. AC Q64338; Q62045; Q8BSV6; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 04-JAN-2005, sequence version 2. DT 27-MAR-2024, entry version 165. DE RecName: Full=Dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C {ECO:0000305|PubMed:8810348}; DE Short=Cam-PDE 1C; DE EC=3.1.4.17 {ECO:0000269|PubMed:8810348}; GN Name=Pde1c {ECO:0000312|MGI:MGI:108413}; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), FUNCTION, CATALYTIC RP ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, AND TISSUE SPECIFICITY. RC STRAIN=BALB/cJ; TISSUE=Brain; RX PubMed=8810348; DOI=10.1074/jbc.271.41.25699; RA Yan C., Zhao A.Z., Bentley J.K., Beavo J.A.; RT "The calmodulin-dependent phosphodiesterase gene PDE1C encodes several RT functionally different splice variants in a tissue-specific manner."; RL J. Biol. Chem. 271:25699-25706(1996). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). RC STRAIN=C57BL/6J; TISSUE=Pituitary; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [3] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Heart, and Testis; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). RN [4] RP FUNCTION, SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY. RX PubMed=29860631; DOI=10.1007/s00439-018-1895-y; RA Wang L., Feng Y., Yan D., Qin L., Grati M., Mittal R., Li T., RA Sundhari A.K., Liu Y., Chapagain P., Blanton S.H., Liao S., Liu X.; RT "A dominant variant in the PDE1C gene is associated with nonsyndromic RT hearing loss."; RL Hum. Genet. 137:437-446(2018). CC -!- FUNCTION: Calmodulin-dependent cyclic nucleotide phosphodiesterase with CC a dual specificity for cAMP and cGMP, which are key regulators of many CC important physiological processes (PubMed:8810348). Exhibits high CC affinity for both cAMP and cGMP (By similarity). Modulates the CC amplitude and duration of the cAMP signal in sensory cilia in response CC to odorant stimulation, hence contributing to the generation of action CC potentials. Regulates smooth muscle cell proliferation. Regulates the CC stability of growth factor receptors, including PDGFRB (Probable). CC {ECO:0000250|UniProtKB:Q14123, ECO:0000269|PubMed:8810348, CC ECO:0000305|PubMed:29860631}. CC -!- CATALYTIC ACTIVITY: CC Reaction=a nucleoside 3',5'-cyclic phosphate + H2O = a nucleoside 5'- CC phosphate + H(+); Xref=Rhea:RHEA:14653, ChEBI:CHEBI:15377, CC ChEBI:CHEBI:15378, ChEBI:CHEBI:57867, ChEBI:CHEBI:58464; EC=3.1.4.17; CC Evidence={ECO:0000269|PubMed:8810348}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:14654; CC Evidence={ECO:0000305|PubMed:8810348}; CC -!- CATALYTIC ACTIVITY: CC Reaction=3',5'-cyclic GMP + H2O = GMP + H(+); Xref=Rhea:RHEA:16957, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:57746, CC ChEBI:CHEBI:58115; Evidence={ECO:0000269|PubMed:8810348}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:16958; CC Evidence={ECO:0000305|PubMed:8810348}; CC -!- CATALYTIC ACTIVITY: CC Reaction=3',5'-cyclic AMP + H2O = AMP + H(+); Xref=Rhea:RHEA:25277, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:58165, CC ChEBI:CHEBI:456215; Evidence={ECO:0000269|PubMed:8810348}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:25278; CC Evidence={ECO:0000305|PubMed:8810348}; CC -!- COFACTOR: CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000250|UniProtKB:Q01064}; CC Note=Binds 2 divalent metal cations per subunit. Site 1 may CC preferentially bind zinc ions. {ECO:0000250|UniProtKB:Q01064}; CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000250|UniProtKB:Q01064}; CC Note=Binds 2 divalent metal cations per subunit. Site 2 has a CC preference for magnesium ions. {ECO:0000250|UniProtKB:Q01064}; CC -!- ACTIVITY REGULATION: Type I PDE are activated by the binding of CC calmodulin in the presence of Ca(2+) (PubMed:8810348). Different splice CC variants may have different sensitivities to Ca(2+) (PubMed:8810348). CC {ECO:0000269|PubMed:8810348}. CC -!- ACTIVITY REGULATION: [Isoform 3]: Exhibits a higher sensitivity to CC Ca(2+) stimulation than isoforms 1 and 2 (PubMed:8810348). CC {ECO:0000269|PubMed:8810348}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: [Isoform 1]: CC Kinetic parameters: CC KM=1.1 uM for 3',5'-cyclic AMP (isoform 1) CC {ECO:0000269|PubMed:8810348}; CC KM=1 uM for 3',5'-cyclic GMP (isoform 1) CC {ECO:0000269|PubMed:8810348}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: [Isoform 2]: CC Kinetic parameters: CC KM=3.5 uM for 3',5'-cyclic AMP (isoform 2) CC {ECO:0000269|PubMed:8810348}; CC KM=2.2 uM for 3',5'-cyclic GMP (isoform 2) CC {ECO:0000269|PubMed:8810348}; CC -!- SUBUNIT: Homodimer. {ECO:0000250|UniProtKB:P14100}. CC -!- SUBCELLULAR LOCATION: Lysosome {ECO:0000269|PubMed:29860631}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=3; Synonyms=PDE1C2 {ECO:0000303|PubMed:8810348}; CC IsoId=Q64338-3; Sequence=Displayed; CC Name=1; Synonyms=PDE1C4 {ECO:0000303|PubMed:8810348}, PDE1C5 CC {ECO:0000303|PubMed:8810348}; CC IsoId=Q64338-1; Sequence=VSP_012381, VSP_012382; CC Name=2; Synonyms=PDE1C1 {ECO:0000303|PubMed:8810348}; CC IsoId=Q64338-2; Sequence=VSP_004554, VSP_012380; CC -!- TISSUE SPECIFICITY: [Isoform 1]: Highly expressed in testis and at CC moderate levels in heart. {ECO:0000269|PubMed:8810348}. CC -!- TISSUE SPECIFICITY: [Isoform 2]: Expressed at a moderate level in CC brain, the cerebellum, testis, heart and olfactory epithelium. CC {ECO:0000269|PubMed:8810348}. CC -!- TISSUE SPECIFICITY: [Isoform 3]: Highly expressed in olfactory CC epithelium and at very low levels, if any, in other tissues CC (PubMed:8810348). In the cochlea, expressed in the inner and outer hair CC cells (at protein level) (PubMed:29860631). In the brain, highly CC expressed in the neurons of the granule layer of the cerebellum, some CC Purkinje cells, the central amygdaloid nucleus, and the interpolar CC spinal trigem nucleus and, at moderate levels, in the glomerular and CC external plexiform layer of the olfactory bulb as well as in parts of CC the caudate-putamen and olfactory tubercle (PubMed:8810348). CC {ECO:0000269|PubMed:29860631, ECO:0000269|PubMed:8810348}. CC -!- MISCELLANEOUS: [Isoform 1]: PDE1C4 and PDE1C5 isoforms differ at the CC level of the 3'-UTR. {ECO:0000305|PubMed:8810348}. CC -!- SIMILARITY: Belongs to the cyclic nucleotide phosphodiesterase family. CC PDE1 subfamily. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; L76947; AAC37702.1; -; mRNA. DR EMBL; L76946; AAC37703.1; -; mRNA. DR EMBL; L76944; AAC37701.1; -; mRNA. DR EMBL; AK030423; BAC26956.1; -; mRNA. DR CCDS; CCDS20170.1; -. [Q64338-1] DR CCDS; CCDS51784.1; -. [Q64338-3] DR CCDS; CCDS51785.1; -. [Q64338-2] DR RefSeq; NP_001020739.1; NM_001025568.2. [Q64338-2] DR RefSeq; NP_001153424.1; NM_001159952.1. DR RefSeq; NP_001153425.1; NM_001159953.1. [Q64338-3] DR RefSeq; NP_001153427.1; NM_001159955.1. [Q64338-1] DR RefSeq; NP_001153432.1; NM_001159960.1. [Q64338-2] DR RefSeq; NP_035184.1; NM_011054.4. [Q64338-1] DR RefSeq; XP_011239552.1; XM_011241250.2. DR RefSeq; XP_017176942.1; XM_017321453.1. DR AlphaFoldDB; Q64338; -. DR SMR; Q64338; -. DR BioGRID; 202076; 2. DR STRING; 10090.ENSMUSP00000046601; -. DR iPTMnet; Q64338; -. DR PhosphoSitePlus; Q64338; -. DR MaxQB; Q64338; -. DR PaxDb; 10090-ENSMUSP00000046601; -. DR ProteomicsDB; 287986; -. [Q64338-3] DR ProteomicsDB; 287987; -. [Q64338-1] DR ProteomicsDB; 287988; -. [Q64338-2] DR Antibodypedia; 12721; 195 antibodies from 28 providers. DR DNASU; 18575; -. DR Ensembl; ENSMUST00000044505.14; ENSMUSP00000046601.8; ENSMUSG00000004347.18. [Q64338-3] DR Ensembl; ENSMUST00000114327.9; ENSMUSP00000109966.3; ENSMUSG00000004347.18. [Q64338-1] DR Ensembl; ENSMUST00000164752.8; ENSMUSP00000129185.2; ENSMUSG00000004347.18. [Q64338-2] DR Ensembl; ENSMUST00000166102.8; ENSMUSP00000131350.2; ENSMUSG00000004347.18. [Q64338-2] DR Ensembl; ENSMUST00000168944.8; ENSMUSP00000128364.2; ENSMUSG00000004347.18. [Q64338-1] DR GeneID; 18575; -. DR KEGG; mmu:18575; -. DR UCSC; uc009caz.2; mouse. [Q64338-3] DR UCSC; uc009cbb.2; mouse. [Q64338-1] DR AGR; MGI:108413; -. DR CTD; 5137; -. DR MGI; MGI:108413; Pde1c. DR VEuPathDB; HostDB:ENSMUSG00000004347; -. DR eggNOG; KOG3688; Eukaryota. DR GeneTree; ENSGT00940000155331; -. DR InParanoid; Q64338; -. DR OMA; NLHERWT; -. DR OrthoDB; 240889at2759; -. DR PhylomeDB; Q64338; -. DR TreeFam; TF314638; -. DR Reactome; R-MMU-111957; Cam-PDE 1 activation. DR BioGRID-ORCS; 18575; 2 hits in 77 CRISPR screens. DR ChiTaRS; Pde1c; mouse. DR PRO; PR:Q64338; -. DR Proteomes; UP000000589; Chromosome 6. DR RNAct; Q64338; Protein. DR Bgee; ENSMUSG00000004347; Expressed in lumbar dorsal root ganglion and 136 other cell types or tissues. DR ExpressionAtlas; Q64338; baseline and differential. DR GO; GO:0005929; C:cilium; IDA:MGI. DR GO; GO:0005764; C:lysosome; IDA:UniProtKB. DR GO; GO:0043025; C:neuronal cell body; ISO:MGI. DR GO; GO:0004115; F:3',5'-cyclic-AMP phosphodiesterase activity; IDA:UniProtKB. DR GO; GO:0047555; F:3',5'-cyclic-GMP phosphodiesterase activity; IDA:UniProtKB. DR GO; GO:0005516; F:calmodulin binding; IEA:UniProtKB-KW. DR GO; GO:0048101; F:calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity; ISO:MGI. DR GO; GO:0004117; F:calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity; ISO:MGI. DR GO; GO:0030552; F:cAMP binding; ISO:MGI. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0061179; P:negative regulation of insulin secretion involved in cellular response to glucose stimulus; ISO:MGI. DR GO; GO:0051592; P:response to calcium ion; ISO:MGI. DR GO; GO:0007608; P:sensory perception of smell; IMP:MGI. DR GO; GO:0007165; P:signal transduction; IBA:GO_Central. DR CDD; cd00077; HDc; 1. DR Gene3D; 1.10.1300.10; 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain; 1. DR InterPro; IPR003607; HD/PDEase_dom. DR InterPro; IPR023088; PDEase. DR InterPro; IPR002073; PDEase_catalytic_dom. DR InterPro; IPR036971; PDEase_catalytic_dom_sf. DR InterPro; IPR023174; PDEase_CS. DR InterPro; IPR013706; PDEase_N. DR PANTHER; PTHR11347; CYCLIC NUCLEOTIDE PHOSPHODIESTERASE; 1. DR PANTHER; PTHR11347:SF32; DUAL SPECIFICITY CALCIUM_CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOTIDE PHOSPHODIESTERASE 1C; 1. DR Pfam; PF00233; PDEase_I; 1. DR Pfam; PF08499; PDEase_I_N; 1. DR PRINTS; PR00387; PDIESTERASE1. DR SMART; SM00471; HDc; 1. DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1. DR PROSITE; PS00126; PDEASE_I_1; 1. DR PROSITE; PS51845; PDEASE_I_2; 1. DR Genevisible; Q64338; MM. PE 1: Evidence at protein level; KW Acetylation; Alternative splicing; Calmodulin-binding; cAMP; cGMP; KW Hydrolase; Lysosome; Magnesium; Metal-binding; Reference proteome; Zinc. FT CHAIN 1..706 FT /note="Dual specificity calcium/calmodulin-dependent 3',5'- FT cyclic nucleotide phosphodiesterase 1C" FT /id="PRO_0000198793" FT DOMAIN 151..528 FT /note="PDEase" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01192" FT REGION 123..146 FT /note="Calmodulin-binding" FT /evidence="ECO:0000250|UniProtKB:P14100" FT REGION 453..497 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 524..655 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 453..495 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 524..553 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 584..632 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 633..649 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT ACT_SITE 228 FT /note="Proton donor" FT /evidence="ECO:0000250|UniProtKB:O76083" FT BINDING 232 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000250|UniProtKB:Q01064" FT BINDING 268 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000250|UniProtKB:Q01064" FT BINDING 269 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /evidence="ECO:0000250|UniProtKB:Q01064" FT BINDING 269 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000250|UniProtKB:Q01064" FT BINDING 376 FT /ligand="Zn(2+)" FT /ligand_id="ChEBI:CHEBI:29105" FT /evidence="ECO:0000250|UniProtKB:Q01064" FT MOD_RES 1 FT /note="N-acetylmethionine" FT /evidence="ECO:0000250|UniProtKB:Q14123" FT VAR_SEQ 628..631 FT /note="GTKK -> DPEE (in isoform 2)" FT /evidence="ECO:0000303|PubMed:8810348" FT /id="VSP_004554" FT VAR_SEQ 632..706 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:8810348" FT /id="VSP_012380" FT VAR_SEQ 651..654 FT /note="VIKP -> GDYG (in isoform 1)" FT /evidence="ECO:0000303|PubMed:8810348" FT /id="VSP_012381" FT VAR_SEQ 655..706 FT /note="Missing (in isoform 1)" FT /evidence="ECO:0000303|PubMed:8810348" FT /id="VSP_012382" SQ SEQUENCE 706 AA; 80290 MW; 1F58533E1259801F CRC64; MESPTKEIEE FESNSLKHLQ PEQIEKIWLR LRGLRKYKKT SQRLRSLVKQ LERGEASVVD LKKNLEYAAT VLESVYIDET RRLLDTEDEL SDIQSDAVPS EVRDWLASTF TRQMGMMLRR SDEKPRFKSI VHAVQAGIFV ERMYRRTSNM VGLSYPPAVI DALKDVDTWS FDVFSLNEAS GDHALKFIFY ELLTRYDLIS RFKIPISALV SFVEALEVGY SKHKNPYHNL MHAADVTQTV HYLLYKTGVA NWLTELEIFA IIFSAAIHDY EHTGTTNNFH IQTRSDPAIL YNDRSVLENH HLSAAYRLLQ EDEEMNILVN LSKDDWREFR TLVIEMVMAT DMSCHFQQIK AMKTALQQPE AIEKPKALSL MLHTADISHP AKAWDLHHRW TMSLLEEFFR QGDREAELGL PFSPLCDRKS TMVAQSQVGF IDFIVEPTFT VLTDMTEKIV SPLIDESSQT GGTGQRRSSL NSINSSDAKR SGVKSSGSDG SAPINNSVIP VDYKSFKATW TEVVQINRER WRAKVPKEEK AKKEAEEKAR LAAEEKQKEM EAKSQAEQGT TSKGEKKTSG EAKSQVNGTR KGDNPRGKNS KGEKAGEKQQ NGDLKDGKNK ADKKDHSNTG NESKKTDGTK KRSHGSPAPS TSSTSRITLP VIKPPLRHFK RPAYASSSYA PSVPKKTDDH PVRYKMLDQR IKMKKIQNIS HHWNKK //