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Protein

C-C motif chemokine

Gene

Ccl20

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

CytokineUniRule annotationSAAS annotation

Keywords - Biological processi

ChemotaxisUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
C-C motif chemokineUniRule annotation
Gene namesi
Name:Ccl20Imported
ORF Names:mCG_10538Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1329031. Ccl20.

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27UniRule annotationAdd BLAST27
ChainiPRO_500845223728 – 96C-C motif chemokineUniRule annotationAdd BLAST69

Expressioni

Gene expression databases

BgeeiENSMUSG00000026166.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000109064.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini29 – 89SCYInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the intercrine beta (chemokine CC) family.UniRule annotationSAAS annotation

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

eggNOGiENOG410J2BK. Eukaryota.
ENOG410ZGME. LUCA.
HOVERGENiHBG017871.
KOiK14625.

Family and domain databases

InterProiIPR000827. Chemokine_CC_CS.
IPR001811. Chemokine_IL8-like_dom.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.
PROSITEiPS00472. SMALL_CYTOKINES_CC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q642U4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MACGGKRLLF LALAWVLLAH LCSQAEASNY DCCLSYIQTP LPSRAIVGFT
60 70 80 90
RQMADEACDI NAIIFHTKKR KSVCADPKQN WVKRAVNLLS LRVKKM
Length:96
Mass (Da):10,755
Last modified:May 10, 2005 - v1
Checksum:iA5236C18BC0E09DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC028504 mRNA. Translation: AAH28504.1.
CH466629 Genomic DNA. Translation: EDL02154.1.
RefSeqiNP_001153210.1. NM_001159738.1.
NP_058656.1. NM_016960.2.
UniGeneiMm.116739.

Genome annotation databases

GeneIDi20297.
KEGGimmu:20297.
UCSCiuc007bsl.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC028504 mRNA. Translation: AAH28504.1.
CH466629 Genomic DNA. Translation: EDL02154.1.
RefSeqiNP_001153210.1. NM_001159738.1.
NP_058656.1. NM_016960.2.
UniGeneiMm.116739.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000109064.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20297.
KEGGimmu:20297.
UCSCiuc007bsl.2. mouse.

Organism-specific databases

CTDi6364.
MGIiMGI:1329031. Ccl20.

Phylogenomic databases

eggNOGiENOG410J2BK. Eukaryota.
ENOG410ZGME. LUCA.
HOVERGENiHBG017871.
KOiK14625.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000026166.

Family and domain databases

InterProiIPR000827. Chemokine_CC_CS.
IPR001811. Chemokine_IL8-like_dom.
[Graphical view]
PfamiPF00048. IL8. 1 hit.
[Graphical view]
SMARTiSM00199. SCY. 1 hit.
[Graphical view]
SUPFAMiSSF54117. SSF54117. 1 hit.
PROSITEiPS00472. SMALL_CYTOKINES_CC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ642U4_MOUSE
AccessioniPrimary (citable) accession number: Q642U4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: November 30, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.