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Protein

C-C motif chemokine

Gene

Ccl20

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionCytokineUniRule annotationSAAS annotation
Biological processChemotaxisUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
C-C motif chemokineUniRule annotation
Gene namesi
Name:Ccl20Imported
ORF Names:mCG_10538Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1329031 Ccl20

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 27UniRule annotationAdd BLAST27
ChainiPRO_501420591628 – 96C-C motif chemokineUniRule annotationAdd BLAST69

Expressioni

Gene expression databases

BgeeiENSMUSG00000026166

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini29 – 89SCYInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the intercrine beta (chemokine CC) family.UniRule annotationSAAS annotation

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

eggNOGiENOG410J2BK Eukaryota
ENOG410ZGME LUCA
HOVERGENiHBG017871
KOiK14625

Family and domain databases

CDDicd01119 Chemokine_CC_DCCL, 1 hit
InterProiView protein in InterPro
IPR000827 Chemokine_CC_CS
IPR034133 Chemokine_CC_DCCL
IPR001811 Chemokine_IL8-like_dom
IPR036048 Interleukin_8-like_sf
PfamiView protein in Pfam
PF00048 IL8, 1 hit
SMARTiView protein in SMART
SM00199 SCY, 1 hit
SUPFAMiSSF54117 SSF54117, 1 hit
PROSITEiView protein in PROSITE
PS00472 SMALL_CYTOKINES_CC, 1 hit

Sequencei

Sequence statusi: Complete.

Q642U4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MACGGKRLLF LALAWVLLAH LCSQAEASNY DCCLSYIQTP LPSRAIVGFT
60 70 80 90
RQMADEACDI NAIIFHTKKR KSVCADPKQN WVKRAVNLLS LRVKKM
Length:96
Mass (Da):10,755
Last modified:May 10, 2005 - v1
Checksum:iA5236C18BC0E09DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC028504 mRNA Translation: AAH28504.1
CH466629 Genomic DNA Translation: EDL02154.1
RefSeqiNP_001153210.1, NM_001159738.1
NP_058656.1, NM_016960.2
UniGeneiMm.116739

Genome annotation databases

GeneIDi20297
KEGGimmu:20297
UCSCiuc007bsl.2 mouse

Similar proteinsi

Entry informationi

Entry nameiQ642U4_MOUSE
AccessioniPrimary (citable) accession number: Q642U4
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: April 25, 2018
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health