Unreviewed, UniProtKB/TrEMBL Q642B0 (Q642B0_RAT)

Names and origin

Protein names

Submitted name:
    Glypican 4 EMBL AAH81962.1

Gene names

Name:

Gpc4 RGD 1359399

Organism

Rattus norvegicus (Rat) EMBL AAH81962.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	557 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Cell surface proteoglycan that bears heparan sulfate By similarity. RuleBase RU003519V0
Subcellular location	Cell membrane; Lipid-anchor › GPI-anchor By similarity RuleBase RU003519V0.
Sequence similarities	Belongs to the glypican family.

Ontologies

Keywords
Cellular component	Membrane
PTM	GPI-anchor RuleBase RU003519V0 Glycoprotein Heparan sulfate RuleBase RU003519V0 Lipoprotein Proteoglycan
Gene Ontology (GO)
Cellular component	anchored to membrane Inferred from electronic annotation. Source: UniProtKB-SubCell proteinaceous extracellular matrix Inferred from electronic annotation. Source: InterPro
Molecular function	heparan sulfate proteoglycan binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q642B0-1 [UniParc]. Last modified October 25, 2004. Version 1. Checksum: 474F590975676CE3	FASTA	557	62,562
	10 20 30 40 50 60 MARLGLLALL CTLAALSASL LAAEPKSKSC SEVRRLYVSK GFNKNDAPLY EINGDHLKIC 70 80 90 100 110 120 SQDYTCCSQE MEEKYSLQSK DDFQTVVSEQ CNHLQAIFAS RYKKFDEFFK ELLENAEKSL 130 140 150 160 170 180 NDMFVKTYGH LYMQNSELFK DLFVELKRYY VAGNVNLEEM LNDFWARLLE RMFRLVNSQY 190 200 210 220 230 240 HFTDEYLECV SKYTEQLKPF GDVPRKLKLQ VTRAFVAART FAQGLAVARD VVNRVSVVNP 250 260 270 280 290 300 TAQCTQALLK MIYCSHCRGL VTVKPCYNYC SNIMRGCLAN QGDLDLEWNN FIDAMLMVAE 310 320 330 340 350 360 RLEGPFNIES VMDPIDVKIS DAIMNMQDNS VQVSQKVFQG CGPPKPLPAG RISRSISESA 370 380 390 400 410 420 FSARFRPYHP EQRPTTAAGT SLDRLVTDVK EKLKQAKKFW SSLPSTVCND ERMAAGNENE 430 440 450 460 470 480 DDCWNGKSKS RYLFAVTGNG LANQGNNPEV QVDTSKPDIL ILRQIMALRV MTSKMKNAYN 490 500 510 520 530 540 GNDVDFFDIS DESSGEGSGS GCEYQQCPSE FEYNATDHSG KSANEKADSA GGAPAEAKPY 550 LLAALCILFL AVQGEWR

References

[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Lung EMBL AAH81962.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC081962 mRNA. Translation: AAH81962.1.
IPI	IPI00471669.
RefSeq	NP_001014130.1.
UniGene	Rn.19945
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q642B0.
Genome annotation databases
Ensembl	ENSRNOT00000003282; ENSRNOP00000003282; ENSRNOG00000002413; Rattus norvegicus. [Genome view]
GeneID	317322.
KEGG	rno:317322.
NMPDR	fig|10116.3.peg.32258.
UCSC	NM_001014108. rat.
Organism-specific databases
CTD	317322.
RGD	1359399. Gpc4.
Phylogenomic databases
eggNOG	roNOG06541.
HOVERGEN	Q642B0.
InParanoid	Q642B0.
OMA	MKNAYNG.
OrthoDB	EOG9Z656W.
Gene expression databases
ArrayExpress	Q642B0.
Genevestigator	Q642B0.
Family and domain databases
InterPro	IPR001863. Glypican. IPR019803. Glypican_CS. [Graphical view]
PANTHER	PTHR10822. Glypican. 1 hit.
Pfam	PF01153. Glypican. 1 hit. [Graphical view]
PROSITE	PS01207. GLYPICAN. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	671601.

Entry information

Entry name

Q642B0_RAT

Accession

Primary (citable) accession number: Q642B0

Entry history

Integrated into UniProtKB/TrEMBL:	October 25, 2004
Last sequence update:	October 25, 2004
Last modified:	February 9, 2010
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)