Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q63ZW6

- Q63ZW6_MOUSE

UniProt

Q63ZW6 - Q63ZW6_MOUSE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Col4a5 protein

Gene

Col4a5

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro

GO - Biological processi

  1. neuromuscular junction development Source: MGI
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Col4a5 proteinImported
Submitted name:
Protein Col4a5Imported
Gene namesi
Name:Col4a5Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:88456. Col4a5.

Subcellular locationi

GO - Cellular componenti

  1. basal lamina Source: MGI
  2. basement membrane Source: MGI
  3. collagen type IV trimer Source: MGI
  4. neuromuscular junction Source: MGI
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Expressioni

Gene expression databases

GenevestigatoriQ63ZW6.

Family & Domainsi

Keywords - Domaini

CollagenSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00760000118776.
HOGENOMiHOG000085652.
HOVERGENiHBG004933.
KOiK06237.
OMAiNCIGTGV.
TreeFamiTF344135.

Family and domain databases

Gene3Di2.170.240.10. 1 hit.
InterProiIPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view]
PfamiPF01413. C4. 2 hits.
PF01391. Collagen. 19 hits.
[Graphical view]
SMARTiSM00111. C4. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 2 hits.
PROSITEiPS51403. NC1_IV. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q63ZW6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQVRGVCLAA GWFLLALCLW GQPAEAAACH GCSSGSKCDC SGIKGEKGER
60 70 80 90 100
GFPGLEGHPG LPGFPGPEGP PGPRGQKGDD GIPGPPGPKG IRGPPGLPGF
110 120 130 140 150
PGTPGLPGMP GHDGAPGPQG IPGCNGTKGE RGFPGSPGFP GLQGPPGPPG
160 170 180 190 200
IPGMKGEPGS IIMSPLPGPK GNQGYPGPPG IQGPPGPKGI SGPSGPPGPP
210 220 230 240 250
GLMGPPGPPG PPGPKGNMGL NFQGPKGEKG EQGLQGPPGP PGQISEQKRP
260 270 280 290 300
IDIEFQKGDQ GVPGDRGPPG PPGIPGPPGP PGGVKGEKGE PGEAGKRGKP
310 320 330 340 350
GKDGETGQPG IPGLPGDPGY PGEPGRDGEK GQKGDIGPPG PPGLVIPAPG
360 370 380 390 400
TGVTMGEKGN IGLPGLPGEK GERGFPGIQG PPGFPGPPGT AVVGPPGPPG
410 420 430 440 450
YPGERGQKGD EGPPGICIPG SPGLDGQPGA PGLPGPPGPP GPQLPSRDEI
460 470 480 490 500
CKAGPPGPPG PPGDKGLQGE RGVKGDKGDT CFNCIGTGIS GPPGQPGLPG
510 520 530 540 550
LPGPPGSLGI PGEKGDKGQA GITGPKGLPG IPGPPGAPGF PGSKGDPGDV
560 570 580 590 600
LTLPGMKGDK GELGFPGAPG LPGLPGSPGK DGLPGLPGPK GEPGGITFKG
610 620 630 640 650
ERGPPGSPGL PGLPGNMGPT GPVGFGPPGP IGEKGIQGVA GNPGQPGLPG
660 670 680 690 700
PKGDPGQTIT QPGKPGLPGS PGRDGEVGLP GDPGLPGQPG LPGIPGSKGE
710 720 730 740 750
PGIPGIGPPG PPGPKGFPGI PGPPGAPGAP GRMGPDGPPG PPGFPGPKGE
760 770 780 790 800
PGFGLPGPPG PPGFPGFKGT PGPKGDRGFP GPSGPPGRTG LDGLPGPKGD
810 820 830 840 850
VGPNGQPGPV GPPGLPGIGL QGPPGPPGTP GPIGQPGLHG IPGEKGDPGP
860 870 880 890 900
PGFDVPGLPG ERGSPGLPGA PGLIGPPGSP GVPGKAGVPG FPGVKGEMGM
910 920 930 940 950
MGPPGPPGPL GIPGRSGAPG LKGDDGMQGQ PGLPGPAGEK GGKGEPGLPG
960 970 980 990 1000
PPGPMHPDFL GSKGEKGEPG LPGIPGLSGP KGYQGLPGDP GQPGLSGQPG
1010 1020 1030 1040 1050
SPGLPGPKGN PGLPGPPGLT GPPGPKGNIG DMGFPGPQGV DGPPGPPGFP
1060 1070 1080 1090 1100
GQPGSPGLPG QKGSKGEPGV SGIGLPGLPG PKGEPGLPGY PGNPGIKGSV
1110 1120 1130 1140 1150
GETGLPGLPG NPGAKGQPGL PGFPGTPGLP GPKGMNGPPG NPGFPGEPGP
1160 1170 1180 1190 1200
VGAGGRPGPP GPPGEKGKPG QDGIPGPAGQ KGEPGQPGFG IPGPPGLPGL
1210 1220 1230 1240 1250
SGQKGDGGSP GLPGNPGLPG SKGEPGFQGF PGMPGPPGPP GSPGQALEGP
1260 1270 1280 1290 1300
KGNPGPQGPP GRPGPPGFQG PPGTEGPRGP PGNGGIKGER GNPGPPGQPG
1310 1320 1330 1340 1350
LPGLKGDQGP PGLPGNPGRP GLNGMKGDPG LPGVPGFPGM KGPIGVPGST
1360 1370 1380 1390 1400
GPDGEPGLTG PPGPPGLPGP SGQSIVIKGD PGPPGIPGQP GLKGLPGLPG
1410 1420 1430 1440 1450
PQGLPGPIGP PGDPGRNGLP GFDGAGGRKG DPGLPGQPGA RGLDGPPGPD
1460 1470 1480 1490 1500
GLQGPPGPPG TTSVAHGFLI TRHSQTTEAP QCPRGTVHIY EGFSLLYVQG
1510 1520 1530 1540 1550
NKRAHGQDLG TAGSCLRRFS TMPFMFCNIN NVCNFASRND YSYWLSTPEP
1560 1570 1580 1590 1600
MPMNMEPLKG QSIQPFISRC AVCEAPAVVI AVHSQTIQIP HCPQGWDSLW
1610 1620 1630 1640 1650
IGYSFMMHTS AGAEGSGQAL ASPGSCLEEF RSAPFIECHG RGTCNYYANS
1660 1670 1680 1690
YSFWLATVDM SDMFNKPQSE TLKAGDLRTR ISRCQVCMKR T
Length:1,691
Mass (Da):161,807
Last modified:October 25, 2004 - v1
Checksum:iE5CD42658128DD07
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL671856 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX571779 Genomic DNA. No translation available.
BC082788 mRNA. Translation: AAH82788.1.
AK133179 mRNA. Translation: BAE21544.1.
RefSeqiNP_001156627.1. NM_001163155.1.
NP_031762.2. NM_007736.4.
UniGeneiMm.286892.

Genome annotation databases

EnsembliENSMUST00000112930; ENSMUSP00000108552; ENSMUSG00000031274.
ENSMUST00000112931; ENSMUSP00000108553; ENSMUSG00000031274.
GeneIDi12830.
KEGGimmu:12830.
UCSCiuc009uln.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL671856 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX571779 Genomic DNA. No translation available.
BC082788 mRNA. Translation: AAH82788.1 .
AK133179 mRNA. Translation: BAE21544.1 .
RefSeqi NP_001156627.1. NM_001163155.1.
NP_031762.2. NM_007736.4.
UniGenei Mm.286892.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000112930 ; ENSMUSP00000108552 ; ENSMUSG00000031274 .
ENSMUST00000112931 ; ENSMUSP00000108553 ; ENSMUSG00000031274 .
GeneIDi 12830.
KEGGi mmu:12830.
UCSCi uc009uln.2. mouse.

Organism-specific databases

CTDi 1287.
MGIi MGI:88456. Col4a5.

Phylogenomic databases

GeneTreei ENSGT00760000118776.
HOGENOMi HOG000085652.
HOVERGENi HBG004933.
KOi K06237.
OMAi NCIGTGV.
TreeFami TF344135.

Enzyme and pathway databases

Reactomei REACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

NextBioi 282330.
PROi Q63ZW6.
SOURCEi Search...

Gene expression databases

Genevestigatori Q63ZW6.

Family and domain databases

Gene3Di 2.170.240.10. 1 hit.
InterProi IPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view ]
Pfami PF01413. C4. 2 hits.
PF01391. Collagen. 19 hits.
[Graphical view ]
SMARTi SM00111. C4. 2 hits.
[Graphical view ]
SUPFAMi SSF56436. SSF56436. 2 hits.
PROSITEi PS51403. NC1_IV. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/NImported.
    Tissue: Mammary tumor. C3Imported.
  7. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  8. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  9. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  10. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  11. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ63ZW6_MOUSE
AccessioniPrimary (citable) accession number: Q63ZW6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: October 29, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3