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Q63ZW6 (Q63ZW6_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 96. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1691 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q63ZW6 [UniParc].

Last modified October 25, 2004. Version 1.
Checksum: E5CD42658128DD07

FASTA1,691161,807
        10         20         30         40         50         60 
MQVRGVCLAA GWFLLALCLW GQPAEAAACH GCSSGSKCDC SGIKGEKGER GFPGLEGHPG 

        70         80         90        100        110        120 
LPGFPGPEGP PGPRGQKGDD GIPGPPGPKG IRGPPGLPGF PGTPGLPGMP GHDGAPGPQG 

       130        140        150        160        170        180 
IPGCNGTKGE RGFPGSPGFP GLQGPPGPPG IPGMKGEPGS IIMSPLPGPK GNQGYPGPPG 

       190        200        210        220        230        240 
IQGPPGPKGI SGPSGPPGPP GLMGPPGPPG PPGPKGNMGL NFQGPKGEKG EQGLQGPPGP 

       250        260        270        280        290        300 
PGQISEQKRP IDIEFQKGDQ GVPGDRGPPG PPGIPGPPGP PGGVKGEKGE PGEAGKRGKP 

       310        320        330        340        350        360 
GKDGETGQPG IPGLPGDPGY PGEPGRDGEK GQKGDIGPPG PPGLVIPAPG TGVTMGEKGN 

       370        380        390        400        410        420 
IGLPGLPGEK GERGFPGIQG PPGFPGPPGT AVVGPPGPPG YPGERGQKGD EGPPGICIPG 

       430        440        450        460        470        480 
SPGLDGQPGA PGLPGPPGPP GPQLPSRDEI CKAGPPGPPG PPGDKGLQGE RGVKGDKGDT 

       490        500        510        520        530        540 
CFNCIGTGIS GPPGQPGLPG LPGPPGSLGI PGEKGDKGQA GITGPKGLPG IPGPPGAPGF 

       550        560        570        580        590        600 
PGSKGDPGDV LTLPGMKGDK GELGFPGAPG LPGLPGSPGK DGLPGLPGPK GEPGGITFKG 

       610        620        630        640        650        660 
ERGPPGSPGL PGLPGNMGPT GPVGFGPPGP IGEKGIQGVA GNPGQPGLPG PKGDPGQTIT 

       670        680        690        700        710        720 
QPGKPGLPGS PGRDGEVGLP GDPGLPGQPG LPGIPGSKGE PGIPGIGPPG PPGPKGFPGI 

       730        740        750        760        770        780 
PGPPGAPGAP GRMGPDGPPG PPGFPGPKGE PGFGLPGPPG PPGFPGFKGT PGPKGDRGFP 

       790        800        810        820        830        840 
GPSGPPGRTG LDGLPGPKGD VGPNGQPGPV GPPGLPGIGL QGPPGPPGTP GPIGQPGLHG 

       850        860        870        880        890        900 
IPGEKGDPGP PGFDVPGLPG ERGSPGLPGA PGLIGPPGSP GVPGKAGVPG FPGVKGEMGM 

       910        920        930        940        950        960 
MGPPGPPGPL GIPGRSGAPG LKGDDGMQGQ PGLPGPAGEK GGKGEPGLPG PPGPMHPDFL 

       970        980        990       1000       1010       1020 
GSKGEKGEPG LPGIPGLSGP KGYQGLPGDP GQPGLSGQPG SPGLPGPKGN PGLPGPPGLT 

      1030       1040       1050       1060       1070       1080 
GPPGPKGNIG DMGFPGPQGV DGPPGPPGFP GQPGSPGLPG QKGSKGEPGV SGIGLPGLPG 

      1090       1100       1110       1120       1130       1140 
PKGEPGLPGY PGNPGIKGSV GETGLPGLPG NPGAKGQPGL PGFPGTPGLP GPKGMNGPPG 

      1150       1160       1170       1180       1190       1200 
NPGFPGEPGP VGAGGRPGPP GPPGEKGKPG QDGIPGPAGQ KGEPGQPGFG IPGPPGLPGL 

      1210       1220       1230       1240       1250       1260 
SGQKGDGGSP GLPGNPGLPG SKGEPGFQGF PGMPGPPGPP GSPGQALEGP KGNPGPQGPP 

      1270       1280       1290       1300       1310       1320 
GRPGPPGFQG PPGTEGPRGP PGNGGIKGER GNPGPPGQPG LPGLKGDQGP PGLPGNPGRP 

      1330       1340       1350       1360       1370       1380 
GLNGMKGDPG LPGVPGFPGM KGPIGVPGST GPDGEPGLTG PPGPPGLPGP SGQSIVIKGD 

      1390       1400       1410       1420       1430       1440 
PGPPGIPGQP GLKGLPGLPG PQGLPGPIGP PGDPGRNGLP GFDGAGGRKG DPGLPGQPGA 

      1450       1460       1470       1480       1490       1500 
RGLDGPPGPD GLQGPPGPPG TTSVAHGFLI TRHSQTTEAP QCPRGTVHIY EGFSLLYVQG 

      1510       1520       1530       1540       1550       1560 
NKRAHGQDLG TAGSCLRRFS TMPFMFCNIN NVCNFASRND YSYWLSTPEP MPMNMEPLKG 

      1570       1580       1590       1600       1610       1620 
QSIQPFISRC AVCEAPAVVI AVHSQTIQIP HCPQGWDSLW IGYSFMMHTS AGAEGSGQAL 

      1630       1640       1650       1660       1670       1680 
ASPGSCLEEF RSAPFIECHG RGTCNYYANS YSFWLATVDM SDMFNKPQSE TLKAGDLRTR 

      1690 
ISRCQVCMKR T 

« Hide

References

« Hide 'large scale' references
[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[6]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N EMBL AAH82788.1.
Tissue: Mammary tumor. C3 EMBL AAH82788.1.
[7]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[8]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[9]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21544.1.
Tissue: Testis EMBL BAE21544.1.
[10]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000108553 Ensembl ENSMUSP00000108552.
[11]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000108553 Ensembl ENSMUSP00000108552.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL671856 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX571779 Genomic DNA. No translation available.
BC082788 mRNA. Translation: AAH82788.1.
AK133179 mRNA. Translation: BAE21544.1.
RefSeqNP_001156627.1. NM_001163155.1.
NP_031762.2. NM_007736.4.
UniGeneMm.286892.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000112930; ENSMUSP00000108552; ENSMUSG00000031274.
ENSMUST00000112931; ENSMUSP00000108553; ENSMUSG00000031274.
GeneID12830.
KEGGmmu:12830.
UCSCuc009uln.2. mouse.

Organism-specific databases

CTD1287.
MGIMGI:88456. Col4a5.

Phylogenomic databases

GeneTreeENSGT00720000108691.
HOGENOMHOG000085652.
HOVERGENHBG004933.
InParanoidQ63ZW6.
KOK06237.
OMANCIGTGV.
TreeFamTF344135.

Gene expression databases

GenevestigatorQ63ZW6.

Family and domain databases

Gene3D2.170.240.10. 1 hit.
InterProIPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view]
PfamPF01413. C4. 2 hits.
PF01391. Collagen. 19 hits.
[Graphical view]
SMARTSM00111. C4. 2 hits.
[Graphical view]
SUPFAMSSF56436. SSF56436. 2 hits.
PROSITEPS51403. NC1_IV. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio282330.
PROQ63ZW6.
SOURCESearch...

Entry information

Entry nameQ63ZW6_MOUSE
AccessionPrimary (citable) accession number: Q63ZW6
Entry history
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: April 16, 2014
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)