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Q63ZW6

- Q63ZW6_MOUSE

UniProt

Q63ZW6 - Q63ZW6_MOUSE

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Protein
Submitted name: Col4a5 protein
Gene
Col4a5
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro

GO - Biological processi

  1. neuromuscular junction development Source: MGI
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Col4a5 proteinImported
Submitted name:
Protein Col4a5Imported
Gene namesi
Name:Col4a5Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:88456. Col4a5.

Subcellular locationi

GO - Cellular componenti

  1. basal lamina Source: MGI
  2. basement membrane Source: MGI
  3. collagen type IV trimer Source: MGI
  4. neuromuscular junction Source: MGI
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotations

Expressioni

Gene expression databases

GenevestigatoriQ63ZW6.

Family & Domainsi

Keywords - Domaini

CollagenSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00720000108691.
HOGENOMiHOG000085652.
HOVERGENiHBG004933.
InParanoidiQ63ZW6.
KOiK06237.
OMAiNCIGTGV.
TreeFamiTF344135.

Family and domain databases

Gene3Di2.170.240.10. 1 hit.
InterProiIPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view]
PfamiPF01413. C4. 2 hits.
PF01391. Collagen. 19 hits.
[Graphical view]
SMARTiSM00111. C4. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 2 hits.
PROSITEiPS51403. NC1_IV. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q63ZW6-1 [UniParc]FASTAAdd to Basket

« Hide

MQVRGVCLAA GWFLLALCLW GQPAEAAACH GCSSGSKCDC SGIKGEKGER     50
GFPGLEGHPG LPGFPGPEGP PGPRGQKGDD GIPGPPGPKG IRGPPGLPGF 100
PGTPGLPGMP GHDGAPGPQG IPGCNGTKGE RGFPGSPGFP GLQGPPGPPG 150
IPGMKGEPGS IIMSPLPGPK GNQGYPGPPG IQGPPGPKGI SGPSGPPGPP 200
GLMGPPGPPG PPGPKGNMGL NFQGPKGEKG EQGLQGPPGP PGQISEQKRP 250
IDIEFQKGDQ GVPGDRGPPG PPGIPGPPGP PGGVKGEKGE PGEAGKRGKP 300
GKDGETGQPG IPGLPGDPGY PGEPGRDGEK GQKGDIGPPG PPGLVIPAPG 350
TGVTMGEKGN IGLPGLPGEK GERGFPGIQG PPGFPGPPGT AVVGPPGPPG 400
YPGERGQKGD EGPPGICIPG SPGLDGQPGA PGLPGPPGPP GPQLPSRDEI 450
CKAGPPGPPG PPGDKGLQGE RGVKGDKGDT CFNCIGTGIS GPPGQPGLPG 500
LPGPPGSLGI PGEKGDKGQA GITGPKGLPG IPGPPGAPGF PGSKGDPGDV 550
LTLPGMKGDK GELGFPGAPG LPGLPGSPGK DGLPGLPGPK GEPGGITFKG 600
ERGPPGSPGL PGLPGNMGPT GPVGFGPPGP IGEKGIQGVA GNPGQPGLPG 650
PKGDPGQTIT QPGKPGLPGS PGRDGEVGLP GDPGLPGQPG LPGIPGSKGE 700
PGIPGIGPPG PPGPKGFPGI PGPPGAPGAP GRMGPDGPPG PPGFPGPKGE 750
PGFGLPGPPG PPGFPGFKGT PGPKGDRGFP GPSGPPGRTG LDGLPGPKGD 800
VGPNGQPGPV GPPGLPGIGL QGPPGPPGTP GPIGQPGLHG IPGEKGDPGP 850
PGFDVPGLPG ERGSPGLPGA PGLIGPPGSP GVPGKAGVPG FPGVKGEMGM 900
MGPPGPPGPL GIPGRSGAPG LKGDDGMQGQ PGLPGPAGEK GGKGEPGLPG 950
PPGPMHPDFL GSKGEKGEPG LPGIPGLSGP KGYQGLPGDP GQPGLSGQPG 1000
SPGLPGPKGN PGLPGPPGLT GPPGPKGNIG DMGFPGPQGV DGPPGPPGFP 1050
GQPGSPGLPG QKGSKGEPGV SGIGLPGLPG PKGEPGLPGY PGNPGIKGSV 1100
GETGLPGLPG NPGAKGQPGL PGFPGTPGLP GPKGMNGPPG NPGFPGEPGP 1150
VGAGGRPGPP GPPGEKGKPG QDGIPGPAGQ KGEPGQPGFG IPGPPGLPGL 1200
SGQKGDGGSP GLPGNPGLPG SKGEPGFQGF PGMPGPPGPP GSPGQALEGP 1250
KGNPGPQGPP GRPGPPGFQG PPGTEGPRGP PGNGGIKGER GNPGPPGQPG 1300
LPGLKGDQGP PGLPGNPGRP GLNGMKGDPG LPGVPGFPGM KGPIGVPGST 1350
GPDGEPGLTG PPGPPGLPGP SGQSIVIKGD PGPPGIPGQP GLKGLPGLPG 1400
PQGLPGPIGP PGDPGRNGLP GFDGAGGRKG DPGLPGQPGA RGLDGPPGPD 1450
GLQGPPGPPG TTSVAHGFLI TRHSQTTEAP QCPRGTVHIY EGFSLLYVQG 1500
NKRAHGQDLG TAGSCLRRFS TMPFMFCNIN NVCNFASRND YSYWLSTPEP 1550
MPMNMEPLKG QSIQPFISRC AVCEAPAVVI AVHSQTIQIP HCPQGWDSLW 1600
IGYSFMMHTS AGAEGSGQAL ASPGSCLEEF RSAPFIECHG RGTCNYYANS 1650
YSFWLATVDM SDMFNKPQSE TLKAGDLRTR ISRCQVCMKR T 1691
Length:1,691
Mass (Da):161,807
Last modified:October 25, 2004 - v1
Checksum:iE5CD42658128DD07
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL671856 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX571779 Genomic DNA. No translation available.
BC082788 mRNA. Translation: AAH82788.1.
AK133179 mRNA. Translation: BAE21544.1.
RefSeqiNP_001156627.1. NM_001163155.1.
NP_031762.2. NM_007736.4.
UniGeneiMm.286892.

Genome annotation databases

EnsembliENSMUST00000112930; ENSMUSP00000108552; ENSMUSG00000031274.
ENSMUST00000112931; ENSMUSP00000108553; ENSMUSG00000031274.
GeneIDi12830.
KEGGimmu:12830.
UCSCiuc009uln.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL671856 Genomic DNA. No translation available.
AL713983 Genomic DNA. No translation available.
BX571779 Genomic DNA. No translation available.
BC082788 mRNA. Translation: AAH82788.1 .
AK133179 mRNA. Translation: BAE21544.1 .
RefSeqi NP_001156627.1. NM_001163155.1.
NP_031762.2. NM_007736.4.
UniGenei Mm.286892.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000112930 ; ENSMUSP00000108552 ; ENSMUSG00000031274 .
ENSMUST00000112931 ; ENSMUSP00000108553 ; ENSMUSG00000031274 .
GeneIDi 12830.
KEGGi mmu:12830.
UCSCi uc009uln.2. mouse.

Organism-specific databases

CTDi 1287.
MGIi MGI:88456. Col4a5.

Phylogenomic databases

GeneTreei ENSGT00720000108691.
HOGENOMi HOG000085652.
HOVERGENi HBG004933.
InParanoidi Q63ZW6.
KOi K06237.
OMAi NCIGTGV.
TreeFami TF344135.

Enzyme and pathway databases

Reactomei REACT_196595. Anchoring fibril formation.
REACT_196606. ECM proteoglycans.
REACT_196607. Non-integrin membrane-ECM interactions.
REACT_198984. Collagen biosynthesis and modifying enzymes.
REACT_199046. Assembly of collagen fibrils and other multimeric structures.
REACT_199055. Collagen degradation.
REACT_202342. Laminin interactions.
REACT_206066. Extracellular matrix organization.
REACT_216309. Integrin cell surface interactions.

Miscellaneous databases

NextBioi 282330.
PROi Q63ZW6.
SOURCEi Search...

Gene expression databases

Genevestigatori Q63ZW6.

Family and domain databases

Gene3Di 2.170.240.10. 1 hit.
InterProi IPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view ]
Pfami PF01413. C4. 2 hits.
PF01391. Collagen. 19 hits.
[Graphical view ]
SMARTi SM00111. C4. 2 hits.
[Graphical view ]
SUPFAMi SSF56436. SSF56436. 2 hits.
PROSITEi PS51403. NC1_IV. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/NImported.
    Tissue: Mammary tumor. C3Imported.
  7. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  8. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  9. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  10. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  11. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ63ZW6_MOUSE
AccessioniPrimary (citable) accession number: Q63ZW6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 25, 2004
Last sequence update: October 25, 2004
Last modified: September 3, 2014
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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