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Protein

Transcription initiation factor TFIID subunit 6

Gene

Taf6

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TIIFD is multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors (By similarity).By similarity

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 6
Alternative name(s):
Transcription initiation factor TFIID 70 kDa subunit
Short name:
TAF(II)70
Short name:
TAFII70
Transcription initiation factor TFIID 80 kDa subunit
Short name:
TAF(II)80
Short name:
TAFII-80
Short name:
TAFII80
p80
Gene namesi
Name:Taf6
Synonyms:Taf2e
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi1311608. Taf6.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 678678Transcription initiation factor TFIID subunit 6PRO_0000118875Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei120 – 1201PhosphothreonineBy similarity
Modified residuei248 – 2481PhosphothreonineCombined sources
Modified residuei253 – 2531PhosphotyrosineCombined sources
Modified residuei264 – 2641PhosphoserineCombined sources
Modified residuei626 – 6261PhosphoserineBy similarity
Modified residuei634 – 6341PhosphoserineBy similarity
Modified residuei636 – 6361PhosphoserineBy similarity
Modified residuei653 – 6531PhosphoserineCombined sources
Modified residuei660 – 6601PhosphothreonineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ63801.
PRIDEiQ63801.

PTM databases

iPTMnetiQ63801.
PhosphoSiteiQ63801.

Expressioni

Gene expression databases

BgeeiENSRNOG00000001355.
GenevisibleiQ63801. RN.

Interactioni

Subunit structurei

TFIID and PCAF are composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). TBP is not part of TFTC. Interacts directly with TBP, TAF1/TAFII250, TAF9/TAFII31 AND TAF12/TAFII20. The TAF6/TAFII70-TAF9/TAFII31 heterodimer forms an octamer complex with the TAF4B/TFII105-TAF12/TFIID20 heterodimer. Also interacts with the GTFs, TFIIEalpha/GTF2E1 and TFIIFalpha/GTF2F1. Component of the TFTC-HAT complex. Component of some MLL1/MLL complex, at least composed of the core components KMT2A/MLL1, ASH2L, HCFC1/HCF1, WDR5 and RBBP5, as well as the facultative components BAP18, CHD8, E2F6, HSP70, INO80C, KANSL1, LAS1L, MAX, MCRS1, MGA, MYST1/MOF, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6, TAF7, TAF9 and TEX10 (By similarity).By similarity

Protein-protein interaction databases

BioGridi252593. 1 interaction.
STRINGi10116.ENSRNOP00000001829.

Structurei

3D structure databases

ProteinModelPortaliQ63801.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TAF6 family.Curated

Phylogenomic databases

eggNOGiKOG2549. Eukaryota.
COG5095. LUCA.
HOGENOMiHOG000253001.
HOVERGENiHBG012489.
InParanoidiQ63801.
OrthoDBiEOG091G05S9.
PhylomeDBiQ63801.
TreeFamiTF313632.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR009072. Histone-fold.
IPR011442. TAF6_C.
IPR004823. TAF_TATA-bd.
[Graphical view]
PfamiPF02969. TAF. 1 hit.
PF07571. TAF6_C. 1 hit.
[Graphical view]
SMARTiSM00803. TAF. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
SSF48371. SSF48371. 1 hit.

Sequencei

Sequence statusi: Complete.

Q63801-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEEKKLKLS NTVLPSESMK VVAESMGIAQ IQEETCQLLT DEVSYRIKEI
60 70 80 90 100
AQDALKFMHM GKRQKLTTSD IDYALKLKNV EPLYGFHAQE FIPFRFASGG
110 120 130 140 150
GRELYFYEEK EVDLSDIINT PLPRVPLDVC LKAHWLSIEG CQPAIPENPP
160 170 180 190 200
PAPKEQQKAE ATEPLKSAKP GQEEDGPLKG KGQGAAAADG KGKEKKAPPL
210 220 230 240 250
LEGAPFRLKP RSIHELSVEQ QLYYKEITEA CVGSCEAKRA EALQSIATDP
260 270 280 290 300
GLYQMLPRFS TFISEGVRVN VVQNNLALLI YLMRMVKALM DNPTLYLEKY
310 320 330 340 350
VHELIPAVMT CIVSRQLCLR PDVDNHWALR DFAARLVAQI CKHFSTTTNN
360 370 380 390 400
IQSRITKTFT KSWVDEKTPW TTRYGSIAGL AELGHDVIKT LILPRLQQEG
410 420 430 440 450
ERIRSVLDGP VLSNIDRIGA DHVQSLLLKH CAPVLAKLRP PPDNQDAYRG
460 470 480 490 500
EFGSLGPLLC SHVVKARAQA ALQAQQVNRT TLTITQPRPT LTLSQAPQPG
510 520 530 540 550
PRTPGLLKVP GSIALPVQTL VSARAAAPPQ PSPPPTKFIV MSSSSSASST
560 570 580 590 600
QQVLSLSTSA PGSGSTTTSP VTTTVPSVQP IVKLVSTATT APPSTAPAGP
610 620 630 640 650
GSVQKYIVVS LPPTGEGKGG PPSHPSPVPP SSSSPSPLGG SALCGGKQET
660 670
GDSPPPAPGT PKANGSQPTG PSSPQPAL
Length:678
Mass (Da):72,713
Last modified:November 1, 1996 - v1
Checksum:i92D7225E3B7CC171
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D49446 mRNA. Translation: BAA08435.1.
RefSeqiXP_008767283.1. XM_008769061.1.
XP_008767284.1. XM_008769062.1.
UniGeneiRn.102447.

Genome annotation databases

GeneIDi288533.
UCSCiRGD:1311608. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D49446 mRNA. Translation: BAA08435.1.
RefSeqiXP_008767283.1. XM_008769061.1.
XP_008767284.1. XM_008769062.1.
UniGeneiRn.102447.

3D structure databases

ProteinModelPortaliQ63801.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi252593. 1 interaction.
STRINGi10116.ENSRNOP00000001829.

PTM databases

iPTMnetiQ63801.
PhosphoSiteiQ63801.

Proteomic databases

PaxDbiQ63801.
PRIDEiQ63801.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi288533.
UCSCiRGD:1311608. rat.

Organism-specific databases

CTDi6878.
RGDi1311608. Taf6.

Phylogenomic databases

eggNOGiKOG2549. Eukaryota.
COG5095. LUCA.
HOGENOMiHOG000253001.
HOVERGENiHBG012489.
InParanoidiQ63801.
OrthoDBiEOG091G05S9.
PhylomeDBiQ63801.
TreeFamiTF313632.

Miscellaneous databases

PROiQ63801.

Gene expression databases

BgeeiENSRNOG00000001355.
GenevisibleiQ63801. RN.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR009072. Histone-fold.
IPR011442. TAF6_C.
IPR004823. TAF_TATA-bd.
[Graphical view]
PfamiPF02969. TAF. 1 hit.
PF07571. TAF6_C. 1 hit.
[Graphical view]
SMARTiSM00803. TAF. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
SSF48371. SSF48371. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiTAF6_RAT
AccessioniPrimary (citable) accession number: Q63801
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.