Q63604 (NTRK2_RAT) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 114.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: BDNF/NT-3 growth factors receptor EC=2.7.10.1 Alternative name(s): Neurotrophic tyrosine kinase receptor type 2 TrkB tyrosine kinase Short name=Trk-B | ||||
| Gene names |
| ||||
| Organism | Rattus norvegicus (Rat) | ||||
| Taxonomic identifier | 10116 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus |
Protein attributes
| Sequence length | 821 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Receptor tyrosine kinase involved in the development and the maturation of the central and the peripheral nervous systems through regulation of neuron survival, proliferation, migration, differentiation, and synapse formation and plasticity. Receptor for BDNF/brain-derived neurotrophic factor and NTF4/neurotrophin-4. Alternatively can also bind NTF3/neurotrophin-3 which is less efficient in activating the receptor but regulates neuron survival through NTRK2. Upon ligand-binding, undergoes homodimerization, autophosphorylation and activation. Recruits, phosphorylates and/or activates several downstream effectors including SHC1, FRS2, SH2B1, SH2B2 and PLCG1 that regulate distinct overlapping signaling cascades. Through SHC1, FRS2, SH2B1, SH2B2 activates the GRB2-Ras-MAPK cascade that regulates for instance neuronal differentiation including neurite outgrowth. Through the same effectors controls the Ras-PI3 kinase-AKT1 signaling cascade that mainly regulates growth and survival. Through PLCG1 and the downstream protein kinase C-regulated pathways controls synaptic plasticity. Thereby, plays a role in learning and memory by regulating both short term synaptic function and long-term potentiation. PLCG1 also leads to NF-Kappa-B activation and the transcription of genes involved in cell survival. Hence, it is able to suppress anoikis, the apoptosis resulting from loss of cell-matrix interactions. May also play a role in neutrophin-dependent calcium signaling in glial cells. Ref.2 Ref.6 Ref.9 Ref.10 |
| Catalytic activity | ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate. |
| Enzyme regulation | The neuronal activity and the influx of calcium positively regulate the kinase activity and the internalization of the receptor which are both important for active signaling. Regulated by NGFR that may control the internalization of the receptor. NGFR may also stimulate the activation by BDNF compared to NTF3 and NTF4. SH2D1A inhibits the autophosphorylation of the receptor, and alters the recruitment and activation of downstream effectors and signaling cascades. The formation of active receptors dimers able to fully transduce the ligand-mediated signal, may be negatively regulated by the formation of inactive heterodimers with the non-catalytic isoforms. Ref.13 |
| Subunit structure | Exists in a dynamic equilibrium between monomeric (low affinity) and dimeric (high affinity) structures. Interacts (phosphorylated upon activation by BDNF) with SHC1; mediates SHC1 phosphorylation and activation. Interacts (phosphorylated upon activation by BDNF) with PLCG1 and/or PLCG2; mediates PLCG1 phosphorylation and activation. Interacts with SH2B1 and SH2B2. Interacts with NGFR; may regulate the ligand specificity of the receptor. Interacts (phosphorylated upon ligand-binding) with SH2D1A; regulates NTRK2. Interacts with SQSTM1 and KIDINS220. Interacts (phosphorylated upon ligand-binding) with FRS2; activates the MAPK signaling pathway. Ref.4 Ref.5 Ref.6 Ref.7 Ref.8 Ref.9 Ref.11 Ref.12 Ref.13 |
| Subcellular location | Cell membrane; Single-pass type I membrane protein. Endosome membrane; Single-pass type I membrane protein By similarity. Note: Internalized to endosomes upon ligand-binding By similarity. Ref.2 |
| Tissue specificity | Widely expressed in the central and peripheral nervous system. The different forms are differentially expressed in various cell types. Isoform T2 is primarily expressed in neurons. |
| Post-translational modification | Phosphorylated. Undergoes ligand-mediated autophosphorylation that is required for interaction with SHC1 and PLCG1 and other downstream effectors. Some isoforms are not phosphorylated. Ref.2 Ref.3 Ref.4 Ref.6 Ref.9 Ubiquitinated. Undergoes polyubiquitination upon activation; regulated by NGFR. Ubiquitination regulates the internalization of the receptor By similarity. |
| Sequence similarities | Belongs to the protein kinase superfamily. Tyr protein kinase family. Insulin receptor subfamily. Contains 2 Ig-like C2-type (immunoglobulin-like) domains. Contains 2 LRR (leucine-rich) repeats. Contains 1 LRRCT domain. Contains 1 LRRNT domain. Contains 1 protein kinase domain. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. | ||||||
| Isoform GP145-TrkB (identifier: Q63604-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform T1 (identifier: Q63604-2) Also known as: GP95-TrkB; The sequence of this isoform differs from the canonical sequence as follows: 466-476: PASVISNDDDS → FVLFHKIPLDG 477-821: Missing. | ||||||
| Note: Non-catalytic isoform. | ||||||
| Isoform T2 (identifier: Q63604-3) The sequence of this isoform differs from the canonical sequence as follows: 466-474: PASVISNDD → KQKCAYFAS 475-821: Missing. | ||||||
| Note: Non-catalytic isoform. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 31 | 31 | By similarity | ||||||||
| Chain | 32 – 821 | 790 | BDNF/NT-3 growth factors receptor | PRO_0000016729 | |||||||
Regions | |||||||||||
| Topological domain | 32 – 429 | 398 | Extracellular Potential | ||||||||
| Transmembrane | 430 – 453 | 24 | Helical; Potential | ||||||||
| Topological domain | 454 – 821 | 368 | Cytoplasmic Potential | ||||||||
| Domain | 32 – 61 | 30 | LRRNT | ||||||||
| Repeat | 92 – 113 | 22 | LRR 1 | ||||||||
| Repeat | 116 – 137 | 22 | LRR 2 | ||||||||
| Domain | 148 – 196 | 49 | LRRCT | ||||||||
| Domain | 197 – 282 | 86 | Ig-like C2-type 1 | ||||||||
| Domain | 295 – 365 | 71 | Ig-like C2-type 2 | ||||||||
| Domain | 537 – 806 | 270 | Protein kinase | ||||||||
| Nucleotide binding | 543 – 551 | 9 | ATP By similarity | ||||||||
Sites | |||||||||||
| Active site | 675 | 1 | Proton acceptor By similarity | ||||||||
| Binding site | 571 | 1 | ATP By similarity | ||||||||
| Site | 515 | 1 | Interaction with SHC1 | ||||||||
| Site | 705 | 1 | Interaction with SH2D1A | ||||||||
| Site | 816 | 1 | Interaction with PLCG1 By similarity | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 515 | 1 | Phosphotyrosine; by autocatalysis By similarity | ||||||||
| Modified residue | 701 | 1 | Phosphotyrosine; by autocatalysis Ref.3 | ||||||||
| Modified residue | 705 | 1 | Phosphotyrosine; by autocatalysis Ref.3 | ||||||||
| Modified residue | 706 | 1 | Phosphotyrosine; by autocatalysis Ref.3 | ||||||||
| Modified residue | 816 | 1 | Phosphotyrosine; by autocatalysis Ref.3 | ||||||||
| Glycosylation | 67 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 95 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 121 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 178 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 205 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 241 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 254 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 280 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 325 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 338 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Glycosylation | 411 | 1 | N-linked (GlcNAc...) By similarity | ||||||||
| Disulfide bond | 32 ↔ 38 | By similarity | |||||||||
| Disulfide bond | 36 ↔ 45 | By similarity | |||||||||
| Disulfide bond | 152 ↔ 176 | By similarity | |||||||||
| Disulfide bond | 154 ↔ 194 | By similarity | |||||||||
| Disulfide bond | 218 ↔ 266 | By similarity | |||||||||
| Disulfide bond | 302 ↔ 345 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 466 – 476 | 11 | PASVISNDDDS → FVLFHKIPLDG in isoform T1. | VSP_002910 | |||||||
| Alternative sequence | 466 – 474 | 9 | PASVISNDD → KQKCAYFAS in isoform T2. | VSP_002912 | |||||||
| Alternative sequence | 475 – 821 | 347 | Missing in isoform T2. | VSP_002913 | |||||||
| Alternative sequence | 477 – 821 | 345 | Missing in isoform T1. | VSP_002911 | |||||||
Experimental info | |||||||||||
| Mutagenesis | 515 | 1 | Y → F: Loss of interaction with SHC1. Ref.9 | ||||||||
| Mutagenesis | 571 | 1 | K → A: Loss of kinase activity. Ref.6 | ||||||||
| Mutagenesis | 701 | 1 | Y → F: Loss of autophosphorylation and altered interaction with SHC1 and PLCG1; when associated with F-705 and F-706. Ref.6 | ||||||||
| Mutagenesis | 705 | 1 | Y → F: Loss of autophosphorylation; when associated with F-701 and F-706. Ref.6 Ref.13 | ||||||||
| Mutagenesis | 706 | 1 | Y → F: Loss of autophosphorylation; when associated with F-701 and F-705. Ref.6 | ||||||||
Sequences
| ||||||||||||||||||||||||||||||
References
| [1] | "trkB, a neural receptor protein-tyrosine kinase: evidence for a full-length and two truncated receptors." Middlemas D.S., Lindberg R.A., Hunter T. Mol. Cell. Biol. 11:143-153(1991) [PubMed: 1846020] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], ALTERNATIVE SPLICING. Tissue: Cerebellum. |
| [2] | "The neurotrophic factors brain-derived neurotrophic factor and neurotrophin-3 are ligands for the trkB tyrosine kinase receptor." Soppet D., Escandon E., Maragos J., Middlemas D.S., Reid S.W., Blair J., Burton L.E., Stanton B.R., Kaplan D.R., Hunter T., Nicolics K., Parada L.F. Cell 65:895-903(1991) [PubMed: 1645620] [Abstract] Cited for: FUNCTION IN BDNF AND NTF3 SIGNALING, PHOSPHORYLATION, SUBCELLULAR LOCATION. |
| [3] | "Identification of TrkB autophosphorylation sites and evidence that phospholipase C-gamma 1 is a substrate of the TrkB receptor." Middlemas D.S., Meisenhelder J., Hunter T. J. Biol. Chem. 269:5458-5466(1994) [PubMed: 8106527] [Abstract] Cited for: PHOSPHORYLATION AT TYR-701; TYR-705; TYR-706 AND TYR-816. |
| [4] | "Naturally occurring truncated trkB receptors have dominant inhibitory effects on brain-derived neurotrophic factor signaling." Eide F.F., Vining E.R., Eide B.L., Zang K., Wang X.Y., Reichardt L.F. J. Neurosci. 16:3123-3129(1996) [PubMed: 8627351] [Abstract] Cited for: ALTERNATIVE SPLICING, HOMODIMERIZATION, AUTOPHOSPHORYLATION. |
| [5] | "Identification and characterization of novel substrates of Trk receptors in developing neurons." Qian X., Riccio A., Zhang Y., Ginty D.D. Neuron 21:1017-1029(1998) [PubMed: 9856458] [Abstract] Cited for: INTERACTION WITH SH2B1 AND SH2B2. |
| [6] | "Activation loop tyrosines contribute varying roles to TrkB autophosphorylation and signal transduction." McCarty J.H., Feinstein S.C. Oncogene 16:1691-1700(1998) [PubMed: 9582017] [Abstract] Cited for: FUNCTION IN CELL PROLIFERATION, FUNCTION IN PHOSPHORYLATION OF SHC1 AND PLCG1, AUTOPHOSPHORYLATION, INTERACTION WITH SHC1; PLCG1 AND PLCG2, MUTAGENESIS OF LYS-571; TYR-701; TYR-705 AND TYR-706. |
| [7] | "Biochemical and functional interactions between the neurotrophin receptors trk and p75NTR." Bibel M., Hoppe E., Barde Y.A. EMBO J. 18:616-622(1999) [PubMed: 9927421] [Abstract] Cited for: INTERACTION WITH NGFR. |
| [8] | "The signaling adapter FRS-2 competes with Shc for binding to the nerve growth factor receptor TrkA. A model for discriminating proliferation and differentiation." Meakin S.O., MacDonald J.I.S., Gryz E.A., Kubu C.J., Verdi J.M. J. Biol. Chem. 274:9861-9870(1999) [PubMed: 10092678] [Abstract] Cited for: INTERACTION WITH FRS2. |
| [9] | "Brain-derived neurotrophic factor induces phosphorylation of fibroblast growth factor receptor substrate 2." Easton J.B., Moody N.M., Zhu X., Middlemas D.S. J. Biol. Chem. 274:11321-11327(1999) [PubMed: 10196222] [Abstract] Cited for: FUNCTION IN PHOSPHORYLATION OF FRS2, INTERACTION WITH SHC1, MUTAGENESIS OF TYR-515. |
| [10] | "The TrkB-Shc site signals neuronal survival and local axon growth via MEK and P13-kinase." Atwal J.K., Massie B., Miller F.D., Kaplan D.R. Neuron 27:265-277(2000) [PubMed: 10985347] [Abstract] Cited for: FUNCTION IN AXONOGENESIS AND NEURON SURVIVAL. |
| [11] | "Association of the atypical protein kinase C-interacting protein p62/ZIP with nerve growth factor receptor TrkA regulates receptor trafficking and Erk5 signaling." Geetha T., Wooten M.W. J. Biol. Chem. 278:4730-4739(2003) [PubMed: 12471037] [Abstract] Cited for: INTERACTION WITH SQSTM1. |
| [12] | "A unique pathway for sustained neurotrophin signaling through an ankyrin-rich membrane-spanning protein." Arevalo J.C., Yano H., Teng K.K., Chao M.V. EMBO J. 23:2358-2368(2004) [PubMed: 15167895] [Abstract] Cited for: INTERACTION WITH KIDINS220. |
| [13] | "SLAM-associated protein as a potential negative regulator in Trk signaling." Lo K.Y., Chin W.H., Ng Y.P., Cheng A.W., Cheung Z.H., Ip N.Y. J. Biol. Chem. 280:41744-41752(2005) [PubMed: 16223723] [Abstract] Cited for: ENZYME REGULATION, INTERACTION WITH SH2D1A, MUTAGENESIS OF TYR-705. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | M55291 mRNA. Translation: AAA42279.1. M55292 mRNA. Translation: AAA42280.1. M55293 mRNA. Translation: AAA42281.1. |
| IPI | IPI00210944. IPI00231143. IPI00231144. |
| PIR | A39667. B39667. C39667. |
| RefSeq | NP_001156640.1. NM_001163168.1. NP_001156641.1. NM_001163169.1. NP_036863.1. NM_012731.2. |
| UniGene | Rn.11246. |
3D structure databases | |
| ProteinModelPortal | Q63604. |
| SMR | Q63604. Positions 283-385. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-5717N. |
| MINT | MINT-1204365. |
| STRING | Q63604. |
PTM databases | |
| PhosphoSite | Q63604. |
Proteomic databases | |
| PRIDE | Q63604. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSRNOT00000042145; ENSRNOP00000045635; ENSRNOG00000018839. ENSRNOT00000066498; ENSRNOP00000059650; ENSRNOG00000018839. |
| GeneID | 25054. |
| KEGG | rno:25054. |
| UCSC | NM_012731. rat. |
Organism-specific databases | |
| CTD | 4915. |
| RGD | 3213. Ntrk2. |
Phylogenomic databases | |
| eggNOG | maNOG06069. |
| HOVERGEN | HBG056735. |
| InParanoid | Q63604. |
| OMA | KFVAYKA. |
| OrthoDB | EOG4255S6. |
| PhylomeDB | Q63604. |
Enzyme and pathway databases | |
| BRENDA | 2.7.10.1. 5301. |
| Reactome | REACT_111984. Signal Transduction. |
Gene expression databases | |
| ArrayExpress | Q63604. |
| Genevestigator | Q63604. |
| GermOnline | ENSRNOG00000018839. Rattus norvegicus. |
Family and domain databases | |
| InterPro | IPR000483. Cys-rich_flank_reg_C. IPR007110. Ig-like. IPR013783. Ig-like_fold. IPR013098. Ig_I-set. IPR003598. Ig_sub2. IPR011009. Kinase-like_dom. IPR000372. LRR-contain_N. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR001245. Ser-Thr/Tyr_kinase. IPR020455. Tyr_kin_neurotrophic_rcpt_2. IPR008266. Tyr_kinase_AS. IPR020635. Tyr_kinase_cat_dom. IPR020777. Tyr_kinase_NGF_rcpt. IPR002011. Tyr_kinase_rcpt_2_CS. [Graphical view] |
| Gene3D | G3DSA:2.60.40.10. Ig-like_fold. 2 hits. |
| KO | K04360. |
| Pfam | PF07679. I-set. 2 hits. PF01462. LRRNT. 1 hit. PF07714. Pkinase_Tyr. 1 hit. [Graphical view] |
| PRINTS | PR01939. NTKRECEPTOR. PR01941. NTKRECEPTOR2. PR00109. TYRKINASE. |
| SMART | SM00408. IGc2. 1 hit. SM00082. LRRCT. 1 hit. SM00013. LRRNT. 1 hit. SM00219. TyrKc. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS50835. IG_LIKE. 1 hit. PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00109. PROTEIN_KINASE_TYR. 1 hit. PS00239. RECEPTOR_TYR_KIN_II. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 605258. |
Entry information
| Entry name | NTRK2_RAT | ||||||||
| Accession | Primary (citable) accession number: Q63604 Secondary accession number(s): Q63605, Q63606 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

Clusters with