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Protein

Ras-related protein Rab-7L1

Gene

Rab29

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Rab GTPase key regulator in vesicle trafficking. Essential for maintaining the integrity of endosome-trans-Golgi network structure. Together with LRRK2, plays a role in the retrograde trafficking pathway for recycling proteins, such as mannose 6 phosphate receptor (M6PR), between lysosomes and the Golgi apparatus in a retromer-dependent manner. Regulates also neuronal process morphology in the intact central nervous system (CNS).1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi14 – 218GTPBy similarity
Nucleotide bindingi33 – 397GTPBy similarity
Nucleotide bindingi63 – 675GTPBy similarity
Nucleotide bindingi125 – 1284GTPBy similarity
Nucleotide bindingi156 – 1572GTPBy similarity

GO - Molecular functioni

  • GTPase activity Source: RGD
  • GTP binding Source: RGD

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Differentiation, Protein transport, Transport

Keywords - Ligandi

GTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein Rab-7L1
Alternative name(s):
Rab-7-like protein 1
Ras-related protein Rab-29
Gene namesi
Name:Rab29
Synonyms:Rab7l1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi620892. Rab7l1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Cytoplasm, Cytoskeleton, Golgi apparatus, Membrane

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi21 – 211T → N: Abolishes localization at trans-Golgi network (TGN) and affects the integrity of the TGN. Inhibits retrograde trafficking of M6PR-associated vesicles. 1 Publication
Mutagenesisi67 – 671Q → L: Localizes predominantly in the cytosol. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 204204Ras-related protein Rab-7L1PRO_0000276770Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi203 – 2031S-geranylgeranyl cysteineBy similarity
Lipidationi204 – 2041S-geranylgeranyl cysteineBy similarity

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PRIDEiQ63481.

Expressioni

Tissue specificityi

Expressed predominantly in kidney and much less in brain, heart, muscle, fat, liver, spleen, adrenal gland, ovary, thymus and lung. Not expressed in testis and intestine.1 Publication

Gene expression databases

ExpressionAtlasiQ63481. baseline.
GenevisibleiQ63481. RN.

Interactioni

Subunit structurei

Interacts with LRRK2.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
LRRK2Q5S0073EBI-6513837,EBI-5323863From a different organism.

Protein-protein interaction databases

DIPiDIP-60518N.
IntActiQ63481. 1 interaction.
STRINGi10116.ENSRNOP00000067600.

Structurei

3D structure databases

ProteinModelPortaliQ63481.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi36 – 449Effector regionBy similarity

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Phylogenomic databases

GeneTreeiENSGT00760000119125.
HOVERGENiHBG009351.
InParanoidiQ63481.
KOiK07916.
OMAiQERFISM.
OrthoDBiEOG78M02X.
PhylomeDBiQ63481.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR030697. Rab29.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
IPR003579. Small_GTPase_Rab_type.
[Graphical view]
PANTHERiPTHR24073:SF315. PTHR24073:SF315. 1 hit.
PfamiPF00071. Ras. 1 hit.
[Graphical view]
PRINTSiPR00449. RASTRNSFRMNG.
SMARTiSM00175. RAB. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q63481-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSRDHLFKV LVVGDAAVGK TSLVQRYSQD SFSKHYKSTV GVDFALKVLQ
60 70 80 90 100
WSDSEMVRLQ LWDIAGQERF TSMTRLYYRD ASACVIMFDV TNATTFSNSQ
110 120 130 140 150
RWKQDLDSKL TLPSGEPVPC LLLANKSDLS PWAVSRDQID RFSKENGFTG
160 170 180 190 200
WTETSVKENK NINEAMRVLV EKMMNNSRED IMSSSTQGNY INLQTKPSPG

WTCC
Length:204
Mass (Da):23,117
Last modified:November 1, 1996 - v1
Checksum:i4CFAE889718F20E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X96663 mRNA. Translation: CAA65444.1.
RefSeqiNP_598274.1. NM_133590.1.
XP_006249806.1. XM_006249744.2.
XP_006249807.1. XM_006249745.2.
UniGeneiRn.4323.

Genome annotation databases

EnsembliENSRNOT00000073669; ENSRNOP00000067600; ENSRNOG00000049641.
GeneIDi171122.
KEGGirno:171122.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X96663 mRNA. Translation: CAA65444.1.
RefSeqiNP_598274.1. NM_133590.1.
XP_006249806.1. XM_006249744.2.
XP_006249807.1. XM_006249745.2.
UniGeneiRn.4323.

3D structure databases

ProteinModelPortaliQ63481.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60518N.
IntActiQ63481. 1 interaction.
STRINGi10116.ENSRNOP00000067600.

Proteomic databases

PRIDEiQ63481.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000073669; ENSRNOP00000067600; ENSRNOG00000049641.
GeneIDi171122.
KEGGirno:171122.

Organism-specific databases

CTDi171122.
RGDi620892. Rab7l1.

Phylogenomic databases

GeneTreeiENSGT00760000119125.
HOVERGENiHBG009351.
InParanoidiQ63481.
KOiK07916.
OMAiQERFISM.
OrthoDBiEOG78M02X.
PhylomeDBiQ63481.

Miscellaneous databases

NextBioi621866.
PROiQ63481.

Gene expression databases

ExpressionAtlasiQ63481. baseline.
GenevisibleiQ63481. RN.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR027417. P-loop_NTPase.
IPR030697. Rab29.
IPR005225. Small_GTP-bd_dom.
IPR001806. Small_GTPase.
IPR003579. Small_GTPase_Rab_type.
[Graphical view]
PANTHERiPTHR24073:SF315. PTHR24073:SF315. 1 hit.
PfamiPF00071. Ras. 1 hit.
[Graphical view]
PRINTSiPR00449. RASTRNSFRMNG.
SMARTiSM00175. RAB. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00231. small_GTP. 1 hit.
PROSITEiPS51419. RAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Cloning of two splicing variants of the novel Ras-related GTPase Rab29 which is predominately expressed in kidney."
    Massmann S., Schuermann A.H., Joost H.-G.
    Biochim. Biophys. Acta 1352:48-55(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
    Strain: Sprague-Dawley.
    Tissue: Brain.
  2. "RAB7L1 interacts with LRRK2 to modify intraneuronal protein sorting and Parkinson's disease risk."
    MacLeod D.A., Rhinn H., Kuwahara T., Zolin A., Di Paolo G., McCabe B.D., MacCabe B.D., Marder K.S., Honig L.S., Clark L.N., Small S.A., Abeliovich A.
    Neuron 77:425-439(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN RETROGRADE TRANSPORT, INTERACTION WITH LRRK2, SUBCELLULAR LOCATION, MUTAGENESIS OF THR-21 AND GLN-67.

Entry informationi

Entry nameiRAB7L_RAT
AccessioniPrimary (citable) accession number: Q63481
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: November 1, 1996
Last modified: July 22, 2015
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.