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Reviewed, UniProtKB/Swiss-Prot Q62HZ8 (RNPH_BURMA)

Last modified November 3, 2009. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Ribonuclease PH
      Short name=RNase PH
    EC=2.7.7.56
Alternative name(s):
    tRNA nucleotidyltransferase
Gene names
Name: rph
Ordered Locus Names: BMA2098
OrganismBurkholderia mallei (Pseudomonas mallei) [Complete proteome] [HAMAP]
Taxonomic identifier13373 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group

Protein attributes

Sequence length243 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity.

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP MF_00564

Sequence similarities

Belongs to the RNase PH family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 243243Ribonuclease PH HAMAP MF_00564
PRO_0000139878

Sequences

Sequence LengthMass (Da)Tools
Q62HZ8-1 [UniParc].

Last modified October 25, 2004. Version 1.
Checksum: F8F805336267EFC0

FASTA24326,052
        10         20         30         40         50         60 
MTNSSLRPSG RRADQLRDVR ITRHYTKHAE GAVLVEFGDT KVICTASVAE RVPEFLRERG 

        70         80         90        100        110        120 
QGWLTAEYGM LPRATHTRSD REAARGKQTG RTQEIQRLIG RALRAVFDLN ALGPRTLHLD 

       130        140        150        160        170        180 
CDVIQADGGT RTASITGAFV AAHDAVTKLV AAGRIARSPI TDYVAAISVG VFGGTPVLDL 

       190        200        210        220        230        240 
DYDEDSACDT DMNVVMTGAG GFVEVQGTAE GAPFSRTEMN ALLDLAQAGI GELVRLQRAA 


LEA 

« Hide

Cross-references

Sequence databases

CP000010 Genomic DNA. Translation: AAU50023.1.
RefSeqYP_103672.1.

3D structure databases

SMRQ62HZ8. Positions 7-241.
ModBaseSearch...

Genome annotation databases

GeneID3088633.
GenomeReviewsGene locus BMA2098 in contig CP000010_GR.
KEGGbma:BMA2098.
TIGRBMA2098.

Phylogenomic databases

HOGENOMQ62HZ8.
OMAYAMLPRA.

Enzyme and pathway databases

BioCycBMAL243160:BMA_2098-MON.
BRENDA2.7.7.56. 260531.

Family and domain databases

HAMAPMF_00564.
[Tree]
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR018336. Ribonuclease-PH_CS.
IPR002381. RNase_PH_bac-type.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRNPH_BURMA
AccessionPrimary (citable) accession number: Q62HZ8
Entry history
Integrated into UniProtKB/Swiss-Prot: March 15, 2005
Last sequence update: October 25, 2004
Last modified: November 3, 2009
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents