Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q62879 (Q62879_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 91. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
PPAR delta protein EMBL AAC52419.1
Gene names
Name:Ppard RGD 3370
Synonyms:PPAR delta EMBL AAC52419.1
OrganismRattus norvegicus (Rat) EMBL AAC52419.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length440 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the nuclear hormone receptor family. RuleBase RU000377

Contains 1 nuclear receptor DNA-binding domain. SAAS SAAS000536

Sequences

Sequence LengthMass (Da)Tools
Q62879 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 6C366A45D04AB60D

FASTA44049,659
        10         20         30         40         50         60 
MEQPQEETPE AREEEKEEVA TGDGAPELNG GPEHTLPSSS CTDLSQNSSP SSLLDQLQMG 

        70         80         90        100        110        120 
CDGASGGSLN MECRVCGDKA SGFHYGVHAC EGCKGFFRRT IRMKLKYEKC DRICKIQKKN 

       130        140        150        160        170        180 
RNKCQYCRFQ KCLALGMSHN AIRFGRMPEA EKRKLVAGLT ASEGCQQNPQ LADLKAFSKH 

       190        200        210        220        230        240 
IYNAYLKNFN MTKKKARSIL TGKSSHNAPF IIHDIETLWQ AEKGLVWKQL VNGPPPYNEI 

       250        260        270        280        290        300 
SVHVFYRCQS TTVETVRELT EFAKNIPNFS SLFLNDQVTL LKYGVHEAIF AMLASIVNKD 

       310        320        330        340        350        360 
GLLVANGSGF VTHEFLRSIR KPFSDIIEPK FEFAVKFNAL ELVDSDLALF IAAIILCGDR 

       370        380        390        400        410        420 
PGLMNVPQVE AIQDTILQAL EFHLQVNHPD SQYLFPKLLQ KMADLRQLVT EHAQMMQWLK 

       430        440 
KTESETLLHP LLQEIYKDMY

« Hide

References

[1]"Rat PPAR delta contains a CGG triplet repeat and is prominently expressed in the thalamic nuclei."
Xing G., Zhang L., Zhang L., Heynen T., Yoshikawa T., Smith M., Weiss S., Detera-Wadleigh S.
Biochem. Biophys. Res. Commun. 217:1015-1025(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Sprague Dawley EMBL AAC52419.1.
Tissue: Brain EMBL AAC52419.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		U40064 mRNA. Translation: AAC52419.1.
IPIIPI00325169.
PIRJC4530.
UniGeneRn.96181.

3D structure databases

HSSPHSSP built from PDB template 3GWX based on UniProtKB Q03181.
ProteinModelPortalQ62879.
SMRQ62879. Positions 64-150, 170-440.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ62879.

PTM databases

PhosphoSiteQ62879.

Proteomic databases

PaxDbQ62879.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

eggNOGNOG266867.
HOGENOMHOG000261626.
HOVERGENHBG106004.
InParanoidQ62879.
OrthoDBEOG4FFD1Q.

Gene expression databases

GenevestigatorQ62879.

Family and domain databases

Gene3D1.10.565.10. 2 hits.
3.30.50.10. 1 hit.
InterProIPR003074. 1Cnucl_rcpt.
IPR003075. 1Cnucl_rcpt_B.
IPR008946. Nucl_hormone_rcpt_ligand-bd.
IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
IPR001723. Str_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSPR01288. PROXISOMEPAR.
PR01290. PROXISOMPABR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMSSF48508. Str_ncl_receptor. 1 hit.
PROSITEPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChEMBLCHEMBL4152.

Entry information

Entry nameQ62879_RAT
AccessionPrimary (citable) accession number: Q62879
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: April 3, 2013
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info