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Protein
Submitted name:

Glutamate receptor ionotropic, NMDA 1

Gene

Grin1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ion channel, Ligand-gated ion channelSAAS annotation, ReceptorSAAS annotationImported

Keywords - Biological processi

Ion transport, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Glutamate receptor ionotropic, NMDA 1Imported
Submitted name:
Glutamate receptor, ionotropic, N-methyl D-aspartate 1, isoform CRA_bImported
Submitted name:
N-methyl-D-aspartate receptor NMDAR1-3b subunitImported
Gene namesi
Name:Grin1Imported
Synonyms:NMDAR1Imported
ORF Names:rCG_45539Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi2736. Grin1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei583 – 601HelicalSequence analysisAdd BLAST19
Transmembranei656 – 678HelicalSequence analysisAdd BLAST23
Transmembranei834 – 858HelicalSequence analysisAdd BLAST25

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell membraneSAAS annotation, Membrane, Postsynaptic cell membraneSAAS annotation, Synapse

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_500817579321 – 943Sequence analysisAdd BLAST923

Expressioni

Gene expression databases

ExpressionAtlasiQ62648. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000029227.

Structurei

3D structure databases

ProteinModelPortaliQ62648.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini454 – 816PBPeInterPro annotationAdd BLAST363
Domaini460 – 528Lig_chan-Glu_bdInterPro annotationAdd BLAST69

Sequence similaritiesi

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. [View classification]SAAS annotation

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG1053. Eukaryota.
ENOG410XNUR. LUCA.
GeneTreeiENSGT00760000119186.
HOGENOMiHOG000231491.
HOVERGENiHBG052638.
OMAiTMSDGTC.
OrthoDBiEOG091G0M5H.

Family and domain databases

InterProiIPR001828. ANF_lig-bd_rcpt.
IPR018882. CaM-bd_C0_NMDA_rcpt_NR1.
IPR019594. Glu/Gly-bd.
IPR001508. Iono_rcpt_met.
IPR001320. Iontro_rcpt.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF01094. ANF_receptor. 1 hit.
PF10562. CaM_bdg_C0. 1 hit.
PF00060. Lig_chan. 1 hit.
PF10613. Lig_chan-Glu_bd. 1 hit.
[Graphical view]
PRINTSiPR00177. NMDARECEPTOR.
SMARTiSM00918. Lig_chan-Glu_bd. 1 hit.
SM00079. PBPe. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.

Sequencei

Sequence statusi: Complete.

Q62648-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTMHLLTFA LLFSCSFARA ACDPKIVNIG AVLSTRKHEQ MFREAVNQAN
60 70 80 90 100
KRHGSWKIQL NATSVTHKPN AIQMALSVCE DLISSQVYAI LVSHPPTPND
110 120 130 140 150
HFTPTPVSYT AGFYRIPVLG LTTRMSIYSD KSIHLSFLRT VPPYSHQSSV
160 170 180 190 200
WFEMMRVYNW NHIILLVSDD HEGRAAQKRL ETLLEERESK SKKRNYENLD
210 220 230 240 250
QLSYDNKRGP KAEKVLQFDP GTKNVTALLM EARELEARVI ILSASEDDAA
260 270 280 290 300
TVYRAAAMLN MTGSGYVWLV GEREISGNAL RYAPDGIIGL QLINGKNESA
310 320 330 340 350
HISDAVGVVA QAVHELLEKE NITDPPRGCV GNTNIWKTGP LFKRVLMSSK
360 370 380 390 400
YADGVTGRVE FNEDGDRKFA NYSIMNLQNR KLVQVGIYNG THVIPNDRKI
410 420 430 440 450
IWPGGETEKP RGYQMSTRLK IVTIHQEPFV YVKPTMSDGT CKEEFTVNGD
460 470 480 490 500
PVKKVICTGP NDTSPGSPRH TVPQCCYGFC IDLLIKLART MNFTYEVHLV
510 520 530 540 550
ADGKFGTQER VNNSNKKEWN GMMGELLSGQ ADMIVAPLTI NNERAQYIEF
560 570 580 590 600
SKPFKYQGLT ILVKKEIPRS TLDSFMQPFQ STLWLLVGLS VHVVAVMLYL
610 620 630 640 650
LDRFSPFGRF KVNSEEEEED ALTLSSAMWF SWGVLLNSGI GEGAPRSFSA
660 670 680 690 700
RILGMVWAGF AMIIVASYTA NLAAFLVLDR PEERITGIND PRLRNPSDKF
710 720 730 740 750
IYATVKQSSV DIYFRRQVEL STMYRHMEKH NYESAAEAIQ AVRDNKLHAF
760 770 780 790 800
IWDSAVLEFE ASQKCDLVTT GELFFRSGFG IGMRKDSPWK QNVSLSILKS
810 820 830 840 850
HENGFMEDLD KTWVRYQECD SRSNAPATLT FENMAGVFML VAGGIVAGIF
860 870 880 890 900
LIFIEIAYKR HKDARRKQMQ LAFAAVNVWR KNLQDRKSGR AEPDPKKKAT
910 920 930 940
FRAITSTLAS SFKRRRSSKD TQYHPTDITG PLNLSDPSVS TVV
Length:943
Mass (Da):106,151
Last modified:November 1, 1996 - v1
Checksum:i3D521E349A5741BB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07051241 Genomic DNA. No translation available.
U08266 mRNA. Translation: AAB50931.1.
CH474001 Genomic DNA. Translation: EDL93607.1.
RefSeqiNP_001257535.1. NM_001270606.1.
UniGeneiRn.9840.

Genome annotation databases

EnsembliENSRNOT00000037725; ENSRNOP00000029227; ENSRNOG00000011726.
GeneIDi24408.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07051241 Genomic DNA. No translation available.
U08266 mRNA. Translation: AAB50931.1.
CH474001 Genomic DNA. Translation: EDL93607.1.
RefSeqiNP_001257535.1. NM_001270606.1.
UniGeneiRn.9840.

3D structure databases

ProteinModelPortaliQ62648.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000029227.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000037725; ENSRNOP00000029227; ENSRNOG00000011726.
GeneIDi24408.

Organism-specific databases

CTDi2902.
RGDi2736. Grin1.

Phylogenomic databases

eggNOGiKOG1053. Eukaryota.
ENOG410XNUR. LUCA.
GeneTreeiENSGT00760000119186.
HOGENOMiHOG000231491.
HOVERGENiHBG052638.
OMAiTMSDGTC.
OrthoDBiEOG091G0M5H.

Gene expression databases

ExpressionAtlasiQ62648. baseline and differential.

Family and domain databases

InterProiIPR001828. ANF_lig-bd_rcpt.
IPR018882. CaM-bd_C0_NMDA_rcpt_NR1.
IPR019594. Glu/Gly-bd.
IPR001508. Iono_rcpt_met.
IPR001320. Iontro_rcpt.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF01094. ANF_receptor. 1 hit.
PF10562. CaM_bdg_C0. 1 hit.
PF00060. Lig_chan. 1 hit.
PF10613. Lig_chan-Glu_bd. 1 hit.
[Graphical view]
PRINTSiPR00177. NMDARECEPTOR.
SMARTiSM00918. Lig_chan-Glu_bd. 1 hit.
SM00079. PBPe. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ62648_RAT
AccessioniPrimary (citable) accession number: Q62648
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.