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Q62318

- TIF1B_MOUSE

UniProt

Q62318 - TIF1B_MOUSE

Protein

Transcription intermediary factor 1-beta

Gene

Trim28

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 160 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    Nuclear corepressor for KRAB domain-containing zinc finger proteins (KRAB-ZFPs). Mediates gene silencing by recruiting CHD3, a subunit of the nucleosome remodeling and deacetylation (NuRD) complex, and SETDB1 (which specifically methylates histone H3 at 'Lys-9' (H3K9me)) to the promoter regions of KRAB target genes. Enhances transcriptional repression by coordinating the increase in H3K9me, the decrease in histone H3 'Lys-9 and 'Lys-14' acetylation (H3K9ac and H3K14ac, respectively) and the disposition of HP1 proteins to silence gene expression. Recruitment of SETDB1 induces heterochromatinization. May play a role as a coactivator for CEBPB and NR3C1 in the transcriptional activation of ORM1. Also corepressor for ERBB4. Inhibits E2F1 activity by stimulating E2F1-HDAC1 complex formation and inhibiting E2F1 acetylation. May serve as a partial backup to prevent E2F1-mediated apoptosis in the absence of RB1. Important regulator of CDKN1A/p21(CIP1). Has E3 SUMO-protein ligase activity toward itself via its PHD-type zinc finger. Specifically sumoylates IRF7, thereby inhibiting its transactivation activity. Ubiquitinates p53/TP53 leading to its proteosomal degradation; the function is enhanced by MAGEC2 and MAGEA2, and possibly MAGEA3 and MAGEA6. Mediates the nuclear localization of KOX1, ZNF268 and ZNF300 transcription factors By similarity.By similarity

    Pathwayi

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri66 – 12257RING-typePROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri149 – 19648B box-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri205 – 24642B box-type 2PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri625 – 67248PHD-typePROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: MGI
    2. Krueppel-associated box domain binding Source: UniProtKB
    3. ligase activity Source: UniProtKB-KW
    4. protein binding Source: UniProtKB
    5. protein kinase activity Source: MGI
    6. transcription coactivator activity Source: MGI
    7. transcription corepressor activity Source: Ensembl
    8. ubiquitin-protein transferase activity Source: Ensembl
    9. zinc ion binding Source: InterPro

    GO - Biological processi

    1. convergent extension involved in axis elongation Source: MGI
    2. DNA methylation involved in embryo development Source: MGI
    3. DNA repair Source: Ensembl
    4. embryo implantation Source: MGI
    5. embryonic placenta morphogenesis Source: MGI
    6. epithelial to mesenchymal transition Source: HGNC
    7. in utero embryonic development Source: MGI
    8. negative regulation of DNA demethylation Source: MGI
    9. negative regulation of transcription, DNA-templated Source: UniProtKB
    10. negative regulation of transcription from RNA polymerase II promoter Source: MGI
    11. positive regulation of DNA repair Source: Ensembl
    12. positive regulation of transcription, DNA-templated Source: HGNC
    13. positive regulation of transcription factor import into nucleus Source: UniProtKB
    14. protein autophosphorylation Source: MGI
    15. protein oligomerization Source: Ensembl
    16. protein phosphorylation Source: MGI
    17. protein sumoylation Source: UniProtKB-UniPathway
    18. regulation of genetic imprinting Source: MGI
    19. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Ligase, Repressor

    Keywords - Biological processi

    Transcription, Transcription regulation, Ubl conjugation pathway

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    ReactomeiREACT_206529. Generic Transcription Pathway.
    UniPathwayiUPA00886.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Transcription intermediary factor 1-beta
    Short name:
    TIF1-beta
    Alternative name(s):
    E3 SUMO-protein ligase TRIM28 (EC:6.3.2.-)
    KRAB-A-interacting protein
    KRIP-1
    Tripartite motif-containing protein 28
    Gene namesi
    Name:Trim28
    Synonyms:Kap1, Krip1, Tif1b
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 7

    Organism-specific databases

    MGIiMGI:109274. Trim28.

    Subcellular locationi

    Nucleus 3 Publications
    Note: Associated with centromeric heterochromatin during cell differentiation through CBX1.

    GO - Cellular componenti

    1. chromatin Source: MGI
    2. nuclear euchromatin Source: MGI
    3. nuclear heterochromatin Source: MGI
    4. nucleoplasm Source: MGI
    5. nucleus Source: HGNC

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed2 Publications
    Chaini2 – 834833Transcription intermediary factor 1-betaPRO_0000056393Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei2 – 21N-acetylalanine2 Publications
    Modified residuei23 – 231Phosphoserine1 Publication
    Modified residuei51 – 511PhosphoserineBy similarity
    Modified residuei267 – 2671N6-acetyllysine1 Publication
    Modified residuei305 – 3051N6-acetyllysineBy similarity
    Modified residuei341 – 3411N6-acetyllysineBy similarity
    Modified residuei378 – 3781N6-acetyllysineBy similarity
    Modified residuei440 – 4401PhosphoserineBy similarity
    Modified residuei470 – 4701Citrulline1 Publication
    Modified residuei471 – 4711PhosphoserineBy similarity
    Modified residuei472 – 4721Citrulline1 Publication
    Modified residuei473 – 4731Phosphoserine4 Publications
    Modified residuei479 – 4791PhosphoserineBy similarity
    Modified residuei489 – 4891PhosphoserineBy similarity
    Modified residuei501 – 5011Phosphoserine1 Publication
    Cross-linki554 – 554Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)By similarity
    Modified residuei594 – 5941PhosphoserineBy similarity
    Cross-linki676 – 676Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)By similarity
    Modified residuei683 – 6831PhosphoserineBy similarity
    Modified residuei697 – 6971PhosphoserineBy similarity
    Cross-linki750 – 750Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)By similarity
    Modified residuei752 – 7521PhosphoserineBy similarity
    Modified residuei757 – 7571PhosphoserineBy similarity
    Modified residuei770 – 7701N6-acetyllysineBy similarity
    Modified residuei774 – 7741N6-acetyllysineBy similarity
    Modified residuei779 – 7791N6-acetyllysine; alternate1 Publication
    Cross-linki779 – 779Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO-1); alternateBy similarity
    Cross-linki804 – 804Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO-1)By similarity
    Modified residuei824 – 8241Phosphoserine; by ATM and ATR and dsDNA kinaseBy similarity

    Post-translational modificationi

    ATM-induced phosphorylation on Ser-824 represses sumoylation leading to the de-repression of expression of a subset of genes involved in cell cycle control and apoptosis in response to genotoxic stress. Dephosphorylation by the phosphatases, PPP1CA and PP1CB forms, allows sumoylation and expression of TRIM28 target genes By similarity.By similarity
    Sumoylation/desumoylation events regulate TRIM28-mediated transcriptional repression. Sumoylation is required for interaction with CHD3 and SETDB1 and the corepressor activity. Represses and is repressed by Ser-824 phosphorylation. Enhances the TRIM28 corepressor activity, inhibiting transcriptional activity of a number of genes including GADD45A and CDKN1A/p21. Lys-554, Lys-779 and Lys-804 are the major sites of sumoylation. In response to Dox-induced DNA damage, enhanced phosphorylation on Ser-824 prevents sumoylation and allows de-repression of CDKN1A/p21 By similarity.By similarity
    Auto-ubiquitinated; enhanced by MAGEA2 and MAGEC2.By similarity
    Citrullinated by PADI4.1 Publication

    Keywords - PTMi

    Acetylation, Citrullination, Isopeptide bond, Phosphoprotein, Ubl conjugation

    Proteomic databases

    MaxQBiQ62318.
    PaxDbiQ62318.
    PRIDEiQ62318.

    2D gel databases

    REPRODUCTION-2DPAGEIPI00312128.
    Q62318.

    PTM databases

    PhosphoSiteiQ62318.

    Miscellaneous databases

    PMAP-CutDBQ62318.

    Expressioni

    Gene expression databases

    ArrayExpressiQ62318.
    BgeeiQ62318.
    CleanExiMM_TRIM28.
    GenevestigatoriQ62318.

    Interactioni

    Subunit structurei

    Oligomer; the RBCC domain homotrimerizes and interacts with one molecule of KRAB to form the KRAB-KAP1 corepressor complex By similarity. Binding to a KRAB domain is an absolute requirement for silencing gene expression. Interacts with a number of KRAB-ZFP proteins including ZNF10, ZFP53, ZFP68, ZNF382 and ZNF256. Interacts with NCOR1, NR3C1 and CHD3. Interacts with CEBPB (via the RING-type and PHD-type zinc fingers). Interacts with CBX5 (via the PxVxL motif); the interaction occurs in interphase nuclei and competes for binding POGZ. Interacts with POGZ; the interaction competes for interaction with CBX5. Interacts with SETDB1; the interaction is enhanced by KAP1 sumoylation, stimulates SETB1 histone methyltransferase activity and gene silencing. Interacts (via the PHD-type zinc finger) with UBE2I; the interaction is required for sumoylation and repressor activity. Component of the TRIM28/KAP1-ERBB4-MDM2 complex involved in connecting growth factor and DNA damage responses. Interacts directly with ERBB4; the interaction represses ERBB4-mediated transcription activity. Interacts with MDM2; the interaction contributes to p53/TP53 inactivation. Component of the TRIM28/KAP1-MDM2-p53/TP53; involved in regulating p53/TP53 stabilization and activity. Interacts (via the leucine zipper alpha helical coiled-coil) with E2F1 (central region); the interaction inhibits E2F1 acetylation and transcriptional activity. Interacts with PPP1CA; the interaction dephosphorylates TRIM28 at Ser-824 and forms a complex at the p21 promoter site. Interacts with PPP1CB; the interaction is weak but is increased on dephosphorylation at Ser-824. Interacts with CEBPB and NR3C1. Interacts with CBX5 (via the PxVxL motif); the interaction occurs in interphase nuclei and competes for binding POGZ. Component of a ternary complex that includes TRIM28, a HP1 protein (CBX1, CBX3 OR CBX5), a KRAB domain-containing protein, and DNA. Interacts with SMARCAD1. Interacts with, and sumoylates IRF7. Interacts with MAGEC2. Part of a complex composed of TRIM28, HDAC1, HDAC2 and EHMT2. Interacts (via the RBCC domain) with KOX1 (via the KRAB domain), ZNF268 (via the KRAB domain) and ZNF300 (via the KRAB domain); the interactions increase KOX1, ZNF268 and ZNF300 nuclear localization activities. Interacts with AICDA. The large PER complex involved in the histone methylation is composed of at least PER2, CBX3, TRIM28, SUV39H1 and/or SUV39H2; CBX3 mediates the formation of the complex.By similarity5 Publications

    Protein-protein interaction databases

    BioGridi204197. 50 interactions.
    DIPiDIP-31477N.
    IntActiQ62318. 28 interactions.
    MINTiMINT-1867627.

    Structurei

    3D structure databases

    ProteinModelPortaliQ62318.
    SMRiQ62318. Positions 65-128, 204-248, 624-812.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini697 – 801105BromoAdd
    BLAST

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni247 – 377131Leucine zipper alpha helical coiled-coil regionAdd
    BLAST
    Regioni248 – 377130Interaction with MAGEC2By similarityAdd
    BLAST
    Regioni367 – 3715Involved in binding PPP1CABy similarity
    Regioni476 – 51338HP1 boxAdd
    BLAST

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi481 – 49414PxVxL motifAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi2 – 5352Ala-richAdd
    BLAST
    Compositional biasi54 – 574Poly-Gly
    Compositional biasi526 – 5316Poly-Ala

    Domaini

    The HP1 box is both necessary and sufficient for HP1 binding.By similarity
    The PHD-type zinc finger enhances CEBPB transcriptional activity. The PHD-type zinc finger, the HP1 box and the bromo domain, function together to assemble the machinery required for repression of KRAB domain-containing proteins. Acts as an intramolecular SUMO E3 ligase for autosumoylation of bromodomain By similarity.By similarity
    The RING-finger-B Box-coiled-coil/tripartite motif (RBCC/TRIM motif) is required for interaction with the KRAB domain of KRAB-zinc finger proteins. Binds four zinc ions per molecule. The RING finger and the N-terminal of the leucine zipper alpha helical coiled-coil region of RBCC are required for oligomerization By similarity.By similarity
    Contains one Pro-Xaa-Val-Xaa-Leu (PxVxL) motif, which is required for interaction with chromoshadow domains. This motif requires additional residues -7, -6, +4 and +5 of the central Val which contact the chromoshadow domain (By similarity).By similarity

    Sequence similaritiesi

    Belongs to the TRIM/RBCC family.Curated
    Contains 2 B box-type zinc fingers.PROSITE-ProRule annotation
    Contains 1 bromo domain.Curated
    Contains 1 PHD-type zinc finger.PROSITE-ProRule annotation
    Contains 1 RING-type zinc finger.PROSITE-ProRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri66 – 12257RING-typePROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri149 – 19648B box-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri205 – 24642B box-type 2PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri625 – 67248PHD-typePROSITE-ProRule annotationAdd
    BLAST

    Keywords - Domaini

    Bromodomain, Repeat, Zinc-finger

    Phylogenomic databases

    eggNOGiNOG284491.
    GeneTreeiENSGT00530000062982.
    HOGENOMiHOG000137674.
    HOVERGENiHBG055353.
    InParanoidiQ62318.
    KOiK08882.
    OMAiANQQKCE.
    OrthoDBiEOG790FZZ.
    PhylomeDBiQ62318.
    TreeFamiTF106455.

    Family and domain databases

    Gene3Di1.20.920.10. 1 hit.
    3.30.40.10. 2 hits.
    InterProiIPR003649. Bbox_C.
    IPR001487. Bromodomain.
    IPR019786. Zinc_finger_PHD-type_CS.
    IPR000315. Znf_B-box.
    IPR011011. Znf_FYVE_PHD.
    IPR001965. Znf_PHD.
    IPR019787. Znf_PHD-finger.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view]
    PfamiPF00628. PHD. 1 hit.
    PF00643. zf-B_box. 2 hits.
    PF14634. zf-RING_5. 1 hit.
    [Graphical view]
    SMARTiSM00502. BBC. 1 hit.
    SM00336. BBOX. 2 hits.
    SM00297. BROMO. 1 hit.
    SM00249. PHD. 1 hit.
    SM00184. RING. 2 hits.
    [Graphical view]
    SUPFAMiSSF57903. SSF57903. 1 hit.
    PROSITEiPS50119. ZF_BBOX. 2 hits.
    PS01359. ZF_PHD_1. 1 hit.
    PS50016. ZF_PHD_2. 1 hit.
    PS50089. ZF_RING_2. 1 hit.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q62318-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MAASAAATAA ASAATAASAA SGSPGSGEGS AGGEKRPAAS SAAAASAAAS    50
    SPAGGGGEAQ ELLEHCGVCR ERLRPERDPR LLPCLHSACS ACLGPATPAA 100
    ANNSGDGGSA GDGAMVDCPV CKQQCYSKDI VENYFMRDSG SKASSDSQDA 150
    NQCCTSCEDN APATSYCVEC SEPLCETCVE AHQRVKYTKD HTVRSTGPAK 200
    TRDGERTVYC NVHKHEPLVL FCESCDTLTC RDCQLNAHKD HQYQFLEDAV 250
    RNQRKLLASL VKRLGDKHAT LQKNTKEVRS SIRQVSDVQK RVQVDVKMAI 300
    LQIMKELNKR GRVLVNDAQK VTEGQQERLE RQHWTMTKIQ KHQEHILRFA 350
    SWALESDNNT ALLLSKKLIY FQLHRALKMI VDPVEPHGEM KFQWDLNAWT 400
    KSAEAFGKIV AERPGTNSTG PGPMAPPRAP GPLSKQGSGS SQPMEVQEGY 450
    GFGSDDPYSS AEPHVSGMKR SRSGEGEVSG LLRKVPRVSL ERLDLDLTSD 500
    SQPPVFKVFP GSTTEDYNLI VIERGAAAAA AGQAGTVPPG APGAPPLPGM 550
    AIVKEEETEA AIGAPPAAPE GPETKPVLMP LTEGPGAEGP RLASPSGSTS 600
    SGLEVVAPEV TSAPVSGPGI LDDSATICRV CQKPGDLVMC NQCEFCFHLD 650
    CHLPALQDVP GEEWSCSLCH VLPDLKEEDG SLSLDGADST GVVAKLSPAN 700
    QRKCERVLLA LFCHEPCRPL HQLATDSTFS MEQPGGTLDL TLIRARLQEK 750
    LSPPYSSPQE FAQDVGRMFK QFNKLTEDKA DVQSIIGLQR FFETRMNDAF 800
    GDTKFSAVLV EPPPLNLPSA GLSSQELSGP GDGP 834
    Length:834
    Mass (Da):88,847
    Last modified:January 23, 2007 - v3
    Checksum:iDE87AAA5DC67BB8B
    GO
    Isoform 2 (identifier: Q62318-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         500-500: D → L
         501-834: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:500
    Mass (Da):53,826
    Checksum:i78407E5422C221D6
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti530 – 5301A → S in AAB17272. (PubMed:8986806)Curated
    Sequence conflicti821 – 8211G → C in AAH58391. (PubMed:15489334)Curated

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei500 – 5001D → L in isoform 2. CuratedVSP_010899
    Alternative sequencei501 – 834334Missing in isoform 2. CuratedVSP_010900Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X99644 mRNA. Translation: CAA67963.1.
    U67303 mRNA. Translation: AAB17272.1.
    AF230878 Genomic DNA. Translation: AAG02638.1.
    AF230391 mRNA. Translation: AAG50170.1.
    AF230392 mRNA. Translation: AAG50171.1.
    BC058391 mRNA. Translation: AAH58391.1.
    AK089084 mRNA. Translation: BAC40742.1.
    CCDSiCCDS20823.1. [Q62318-1]
    RefSeqiNP_035718.2. NM_011588.3. [Q62318-1]
    UniGeneiMm.15701.
    Mm.398345.

    Genome annotation databases

    EnsembliENSMUST00000005705; ENSMUSP00000005705; ENSMUSG00000005566. [Q62318-1]
    GeneIDi21849.
    KEGGimmu:21849.
    UCSCiuc009ffb.2. mouse. [Q62318-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X99644 mRNA. Translation: CAA67963.1 .
    U67303 mRNA. Translation: AAB17272.1 .
    AF230878 Genomic DNA. Translation: AAG02638.1 .
    AF230391 mRNA. Translation: AAG50170.1 .
    AF230392 mRNA. Translation: AAG50171.1 .
    BC058391 mRNA. Translation: AAH58391.1 .
    AK089084 mRNA. Translation: BAC40742.1 .
    CCDSi CCDS20823.1. [Q62318-1 ]
    RefSeqi NP_035718.2. NM_011588.3. [Q62318-1 ]
    UniGenei Mm.15701.
    Mm.398345.

    3D structure databases

    ProteinModelPortali Q62318.
    SMRi Q62318. Positions 65-128, 204-248, 624-812.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 204197. 50 interactions.
    DIPi DIP-31477N.
    IntActi Q62318. 28 interactions.
    MINTi MINT-1867627.

    PTM databases

    PhosphoSitei Q62318.

    2D gel databases

    REPRODUCTION-2DPAGE IPI00312128.
    Q62318.

    Proteomic databases

    MaxQBi Q62318.
    PaxDbi Q62318.
    PRIDEi Q62318.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000005705 ; ENSMUSP00000005705 ; ENSMUSG00000005566 . [Q62318-1 ]
    GeneIDi 21849.
    KEGGi mmu:21849.
    UCSCi uc009ffb.2. mouse. [Q62318-1 ]

    Organism-specific databases

    CTDi 10155.
    MGIi MGI:109274. Trim28.

    Phylogenomic databases

    eggNOGi NOG284491.
    GeneTreei ENSGT00530000062982.
    HOGENOMi HOG000137674.
    HOVERGENi HBG055353.
    InParanoidi Q62318.
    KOi K08882.
    OMAi ANQQKCE.
    OrthoDBi EOG790FZZ.
    PhylomeDBi Q62318.
    TreeFami TF106455.

    Enzyme and pathway databases

    UniPathwayi UPA00886 .
    Reactomei REACT_206529. Generic Transcription Pathway.

    Miscellaneous databases

    ChiTaRSi TRIM28. mouse.
    NextBioi 301330.
    PMAP-CutDB Q62318.
    PROi Q62318.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q62318.
    Bgeei Q62318.
    CleanExi MM_TRIM28.
    Genevestigatori Q62318.

    Family and domain databases

    Gene3Di 1.20.920.10. 1 hit.
    3.30.40.10. 2 hits.
    InterProi IPR003649. Bbox_C.
    IPR001487. Bromodomain.
    IPR019786. Zinc_finger_PHD-type_CS.
    IPR000315. Znf_B-box.
    IPR011011. Znf_FYVE_PHD.
    IPR001965. Znf_PHD.
    IPR019787. Znf_PHD-finger.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view ]
    Pfami PF00628. PHD. 1 hit.
    PF00643. zf-B_box. 2 hits.
    PF14634. zf-RING_5. 1 hit.
    [Graphical view ]
    SMARTi SM00502. BBC. 1 hit.
    SM00336. BBOX. 2 hits.
    SM00297. BROMO. 1 hit.
    SM00249. PHD. 1 hit.
    SM00184. RING. 2 hits.
    [Graphical view ]
    SUPFAMi SSF57903. SSF57903. 1 hit.
    PROSITEi PS50119. ZF_BBOX. 2 hits.
    PS01359. ZF_PHD_1. 1 hit.
    PS50016. ZF_PHD_2. 1 hit.
    PS50089. ZF_RING_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors."
      le Douarin B., Nielsen A.L., Garnier J.-M., Ichinose H., Jeanmougin F., Losson R., Chambon P.
      EMBO J. 15:6701-6715(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
    2. "A novel member of the RING finger family, KRIP-1, associates with the KRAB-A transcriptional repressor domain of zinc finger proteins."
      Kim S.-S., Chen Y.-M., O'Leary E., Witzgall R., Vidal M., Bonventre J.V.
      Proc. Natl. Acad. Sci. U.S.A. 93:15299-15304(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
      Tissue: Kidney.
    3. "Correlation of the exon/intron organization to the conserved domains of the mouse transcriptional corepressor TIF1beta."
      Cammas F., Garnier J.-M., Chambon P., Losson R.
      Gene 253:231-235(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1).
    4. Cited for: NUCLEOTIDE SEQUENCE (ISOFORMS 1 AND 2).
    5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Strain: C57BL/6.
      Tissue: Brain.
    6. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 595-834 (ISOFORM 1).
      Strain: NOD.
      Tissue: Thymus.
    7. "Coactivator TIF1beta interacts with transcription factor C/EBPbeta and glucocorticoid receptor to induce alpha1-acid glycoprotein gene expression."
      Chang C.J., Chen Y.L., Lee S.C.
      Mol. Cell. Biol. 18:5880-5887(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH CEBPB AND NR3C1, FUNCTION.
    8. "Interaction with members of the heterochromatin protein 1 (HP1) family and histone deacetylation are differentially involved in transcriptional silencing by members of the TIF1 family."
      Nielsen A.L., Ortiz J.A., You J., Oulad-Abdelghani M., Khechumian R., Gansmuller A., Chambon P., Losson R.
      EMBO J. 18:6385-6395(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH CBX1; CBX3 AND CBX5.
    9. "KAP-1 corepressor protein interacts and colocalizes with heterochromatic and euchromatic HP1 proteins: a potential role for Kruppel-associated box-zinc finger proteins in heterochromatin-mediated gene silencing."
      Ryan R.F., Schultz D.C., Ayyanathan K., Singh P.B., Friedman J.R., Fredericks W.J., Rauscher F.J. III
      Mol. Cell. Biol. 19:4366-4378(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION, INTERACTION WITH CBX1; CBX3 AND CBX5.
    10. "Sequence-specific transcriptional repression by KS1, a multiple-zinc-finger-Kruppel-associated box protein."
      Gebelein B., Urrutia R.
      Mol. Cell. Biol. 21:928-939(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH ZNF382, SUBCELLULAR LOCATION.
    11. "Cell differentiation induces TIF1beta association with centromeric heterochromatin via an HP1 interaction."
      Cammas F., Oulad-Abdelghani M., Vonesch J.-L., Huss-Garcia Y., Chambon P., Losson R.
      J. Cell Sci. 115:3439-3448(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: SUBCELLULAR LOCATION.
    12. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Embryonic brain.
    13. "Comprehensive identification of phosphorylation sites in postsynaptic density preparations."
      Trinidad J.C., Specht C.G., Thalhammer A., Schoepfer R., Burlingame A.L.
      Mol. Cell. Proteomics 5:914-922(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Brain.
    14. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS], CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS].
      Tissue: Liver.
    15. "The phagosomal proteome in interferon-gamma-activated macrophages."
      Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
      Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    16. "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry."
      Sweet S.M., Bailey C.M., Cunningham D.L., Heath J.K., Cooper H.J.
      Mol. Cell. Proteomics 8:904-912(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-23; SER-473 AND SER-501, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Embryonic fibroblast.
    17. Cited for: FUNCTION, INTERACTION WITH AICDA.
    18. "Temporal orchestration of repressive chromatin modifiers by circadian clock Period complexes."
      Duong H.A., Weitz C.J.
      Nat. Struct. Mol. Biol. 21:126-132(2014) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFIACTION IN A LARGE PER COMPLEX.
    19. Cited for: CITRULLINATION AT ARG-470 AND ARG-472.
    20. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
      Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
      Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-267 AND LYS-779, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
      Tissue: Embryonic fibroblast.

    Entry informationi

    Entry nameiTIF1B_MOUSE
    AccessioniPrimary (citable) accession number: Q62318
    Secondary accession number(s): P70391, Q8C283, Q99PN4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 15, 1998
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 160 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3