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Protein

Transcription initiation factor TFIID subunit 6

Gene

Taf6

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TIIFD is multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Enzyme and pathway databases

ReactomeiR-MMU-674695. RNA Polymerase II Pre-transcription Events.
R-MMU-6804756. Regulation of TP53 Activity through Phosphorylation.
R-MMU-6807505. RNA polymerase II transcribes snRNA genes.
R-MMU-73776. RNA Polymerase II Promoter Escape.
R-MMU-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-MMU-75953. RNA Polymerase II Transcription Initiation.
R-MMU-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 6
Alternative name(s):
Transcription initiation factor TFIID 70 kDa subunit
Short name:
TAF(II)70
Short name:
TAFII-70
Short name:
TAFII70
Transcription initiation factor TFIID 80 kDa subunit
Short name:
TAF(II)80
Short name:
TAFII-80
Short name:
TAFII80
p80
Gene namesi
Name:Taf6
Synonyms:Taf2e
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 5

Organism-specific databases

MGIiMGI:109129. Taf6.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 678678Transcription initiation factor TFIID subunit 6PRO_0000118874Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei120 – 1201PhosphothreonineBy similarity
Modified residuei248 – 2481PhosphothreonineBy similarity
Modified residuei253 – 2531PhosphotyrosineBy similarity
Modified residuei264 – 2641PhosphoserineBy similarity
Modified residuei626 – 6261PhosphoserineCombined sources
Modified residuei634 – 6341PhosphoserineCombined sources
Modified residuei636 – 6361PhosphoserineBy similarity
Modified residuei653 – 6531PhosphoserineCombined sources
Modified residuei660 – 6601PhosphothreonineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ62311.
MaxQBiQ62311.
PaxDbiQ62311.
PeptideAtlasiQ62311.
PRIDEiQ62311.

PTM databases

iPTMnetiQ62311.
PhosphoSiteiQ62311.

Expressioni

Gene expression databases

BgeeiQ62311.
ExpressionAtlasiQ62311. baseline and differential.
GenevisibleiQ62311. MM.

Interactioni

Subunit structurei

TFIID and PCAF are composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). TBP is not part of TFTC. Interacts directly with TBP, TAF1/TAFII250, TAF9/TAFII31 AND TAF12/TAFII20. The TAF6/TAFII70-TAF9/TAFII31 heterodimer forms an octamer complex with the TAF4B/TFII105-TAF12/TFIID20 heterodimer. Also interacts with the GTFs, TFIIEalpha/GTF2E1 and TFIIFalpha/GTF2F1. Component of the TFTC-HAT complex. Component of some MLL1/MLL complex, at least composed of the core components KMT2A/MLL1, ASH2L, HCFC1/HCF1, WDR5 and RBBP5, as well as the facultative components BAP18, CHD8, E2F6, HSP70, INO80C, KANSL1, LAS1L, MAX, MCRS1, MGA, MYST1/MOF, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6, TAF7, TAF9 and TEX10 (By similarity).By similarity

Protein-protein interaction databases

BioGridi203959. 2 interactions.
DIPiDIP-493N.
IntActiQ62311. 3 interactions.
MINTiMINT-269059.
STRINGi10090.ENSMUSP00000048016.

Structurei

3D structure databases

ProteinModelPortaliQ62311.
SMRiQ62311. Positions 9-76, 214-392.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TAF6 family.Curated

Phylogenomic databases

eggNOGiKOG2549. Eukaryota.
COG5095. LUCA.
GeneTreeiENSGT00640000091486.
HOGENOMiHOG000253001.
HOVERGENiHBG012489.
InParanoidiQ62311.
KOiK03131.
OMAiQEETCQL.
OrthoDBiEOG7TQV0B.
PhylomeDBiQ62311.
TreeFamiTF313632.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR009072. Histone-fold.
IPR011442. TAF6_C.
IPR004823. TAF_TATA-bd.
[Graphical view]
PfamiPF02969. TAF. 1 hit.
PF07571. TAF6_C. 1 hit.
[Graphical view]
SMARTiSM00803. TAF. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
SSF48371. SSF48371. 1 hit.

Sequencei

Sequence statusi: Complete.

Q62311-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAEEKKLKLS NTVLPSESMK VVAESMGIAQ IQEETCQLLT DEVSYRIKEI
60 70 80 90 100
AQDALKFMHM GKRQKLTTSD IDYALKLKNV EPLYGFHAQE FIPFRFASGG
110 120 130 140 150
GRELYFYEEK EVDLSDIINT PLPRVPLDVC LKAHWLSIEG CQPAIPENPP
160 170 180 190 200
PAPKEQQKAE ATEPLKSAKP GQEEDGPLKG KGQGAAAADG KGKEKKAPPL
210 220 230 240 250
LEGAPFRLKP RSIHELSVEQ QLYYKEITEA CVGSCEAKRA EALQSIATDP
260 270 280 290 300
GLYQMLPRFS TFISEGVRVN VVQNNLALLI YLMRMVKALM DNPTLYLEKY
310 320 330 340 350
VHELIPAVMT CIVSRQLCLR PDVDNHWALR DFAARLVAQI CKHFSTTTNN
360 370 380 390 400
IQSRITKTFT KSWVDEKTPW TTRYGSIAGL AELGHDVIKT LILPRLQQEG
410 420 430 440 450
ERIRSVLDGP VLSNIDRIGA DHVQSLLLKH CAPVLAKLRP PPDNQDAYRG
460 470 480 490 500
EFGSLGPLLC SHVVKARAQA ALQAQQVNRT TLTITQPRPT LTLSQAPQPG
510 520 530 540 550
PRTPGLLKVP GSIALPVQTL VSARAAAPPQ PSPPPTKFIV MSSSSSASST
560 570 580 590 600
QQVLSLSTSA PGSGSTTTSP VTTTVPSVQP IVKLVSTATT APPSTAPAGS
610 620 630 640 650
GSVQKYIVVS LPPTGEGKGG PPSHPSPVPP SSSSPSPLGG STLCGGKQEA
660 670
GDSPPPAPGT PKANGSQPTG PGSPQPAL
Length:678
Mass (Da):72,673
Last modified:November 1, 1996 - v1
Checksum:i2F454DA3A29B410D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D49439 mRNA. Translation: BAA08417.1.
BC058583 mRNA. Translation: AAH58583.1.
CCDSiCCDS19795.1.
PIRiJC4245.
RefSeqiNP_033341.1. NM_009315.3.
UniGeneiMm.248517.

Genome annotation databases

EnsembliENSMUST00000048698; ENSMUSP00000048016; ENSMUSG00000036980.
ENSMUST00000110936; ENSMUSP00000106561; ENSMUSG00000036980.
GeneIDi21343.
KEGGimmu:21343.
UCSCiuc009aew.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D49439 mRNA. Translation: BAA08417.1.
BC058583 mRNA. Translation: AAH58583.1.
CCDSiCCDS19795.1.
PIRiJC4245.
RefSeqiNP_033341.1. NM_009315.3.
UniGeneiMm.248517.

3D structure databases

ProteinModelPortaliQ62311.
SMRiQ62311. Positions 9-76, 214-392.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi203959. 2 interactions.
DIPiDIP-493N.
IntActiQ62311. 3 interactions.
MINTiMINT-269059.
STRINGi10090.ENSMUSP00000048016.

PTM databases

iPTMnetiQ62311.
PhosphoSiteiQ62311.

Proteomic databases

EPDiQ62311.
MaxQBiQ62311.
PaxDbiQ62311.
PeptideAtlasiQ62311.
PRIDEiQ62311.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000048698; ENSMUSP00000048016; ENSMUSG00000036980.
ENSMUST00000110936; ENSMUSP00000106561; ENSMUSG00000036980.
GeneIDi21343.
KEGGimmu:21343.
UCSCiuc009aew.1. mouse.

Organism-specific databases

CTDi6878.
MGIiMGI:109129. Taf6.

Phylogenomic databases

eggNOGiKOG2549. Eukaryota.
COG5095. LUCA.
GeneTreeiENSGT00640000091486.
HOGENOMiHOG000253001.
HOVERGENiHBG012489.
InParanoidiQ62311.
KOiK03131.
OMAiQEETCQL.
OrthoDBiEOG7TQV0B.
PhylomeDBiQ62311.
TreeFamiTF313632.

Enzyme and pathway databases

ReactomeiR-MMU-674695. RNA Polymerase II Pre-transcription Events.
R-MMU-6804756. Regulation of TP53 Activity through Phosphorylation.
R-MMU-6807505. RNA polymerase II transcribes snRNA genes.
R-MMU-73776. RNA Polymerase II Promoter Escape.
R-MMU-73779. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
R-MMU-75953. RNA Polymerase II Transcription Initiation.
R-MMU-76042. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Miscellaneous databases

PROiQ62311.
SOURCEiSearch...

Gene expression databases

BgeeiQ62311.
ExpressionAtlasiQ62311. baseline and differential.
GenevisibleiQ62311. MM.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR009072. Histone-fold.
IPR011442. TAF6_C.
IPR004823. TAF_TATA-bd.
[Graphical view]
PfamiPF02969. TAF. 1 hit.
PF07571. TAF6_C. 1 hit.
[Graphical view]
SMARTiSM00803. TAF. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
SSF48371. SSF48371. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Isolation of a cDNA encoding a mouse TFIID subunit containing histone H4 homology."
    Umehara T., Kida S., Horikoshi M.
    Gene 161:301-302(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N-3.
    Tissue: Mammary gland.
  3. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-626; SER-634; SER-653 AND THR-660, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brown adipose tissue, Heart, Kidney, Lung, Spleen and Testis.

Entry informationi

Entry nameiTAF6_MOUSE
AccessioniPrimary (citable) accession number: Q62311
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 134 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.