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Protein

Glutamate receptor ionotropic, delta-2

Gene

Grid2

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Receptor for glutamate. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists.

GO - Molecular functioni

  • extracellular-glutamate-gated ion channel activity Source: InterPro
  • ionotropic glutamate receptor activity Source: InterPro
  • PDZ domain binding Source: BHF-UCL
  • scaffold protein binding Source: BHF-UCL

GO - Biological processi

  • cellular protein localization Source: BHF-UCL
  • cerebellar granule cell differentiation Source: BHF-UCL
  • excitatory postsynaptic potential Source: MGI
  • heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules Source: BHF-UCL
  • prepulse inhibition Source: MGI
  • regulation of neuron apoptotic process Source: MGI
  • regulation of neuron projection development Source: MGI
  • synaptic transmission, glutamatergic Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Ion channel, Ligand-gated ion channel, Receptor

Keywords - Biological processi

Ion transport, Transport

Protein family/group databases

TCDBi1.A.10.1.8. the glutamate-gated ion channel (gic) family of neurotransmitter receptors.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate receptor ionotropic, delta-2
Short name:
GluD2
Short name:
GluR delta-2 subunit
Gene namesi
Name:Grid2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:95813. Grid2.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini24 – 566ExtracellularSequence analysisAdd BLAST543
Transmembranei567 – 587HelicalSequence analysisAdd BLAST21
Topological domaini588 – 635CytoplasmicSequence analysisAdd BLAST48
Transmembranei636 – 656HelicalSequence analysisAdd BLAST21
Topological domaini657 – 830ExtracellularSequence analysisAdd BLAST174
Transmembranei831 – 851HelicalSequence analysisAdd BLAST21
Topological domaini852 – 1007CytoplasmicSequence analysisAdd BLAST156

GO - Cellular componenti

  • cell junction Source: UniProtKB-KW
  • dendritic spine Source: BHF-UCL
  • ionotropic glutamate receptor complex Source: BHF-UCL
  • membrane Source: MGI
  • plasma membrane Source: BHF-UCL
  • postsynaptic membrane Source: BHF-UCL
  • synapse Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell membrane, Membrane, Postsynaptic cell membrane, Synapse

Pathology & Biotechi

Involvement in diseasei

Defects in Grid2 are the cause of the Lurcher phenotype. Heterozygous animals display a characteristic swaying of the hind quarters and jerky up and down movements following cerebellar Purkinje cell degeneration during postnatal development. Homozygous animals die shortly after birth because of a massive loss of midbrain and hindbrain neurons during late embryogenesis.

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi920S → A: Abolishes interaction with SHANK1 and SHANK2. 1 Publication1

Keywords - Diseasei

Disease mutation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_000001156524 – 1007Glutamate receptor ionotropic, delta-2Add BLAST984

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi293N-linked (GlcNAc...)Sequence analysis1
Glycosylationi426N-linked (GlcNAc...)Sequence analysis1
Modified residuei883PhosphoserineCombined sources1
Modified residuei886PhosphothreonineCombined sources1
Modified residuei890PhosphoserineCombined sources1
Modified residuei1006PhosphoserineBy similarity1

Keywords - PTMi

Glycoprotein, Phosphoprotein

Proteomic databases

MaxQBiQ61625.
PaxDbiQ61625.
PeptideAtlasiQ61625.
PRIDEiQ61625.

PTM databases

iPTMnetiQ61625.
PhosphoSitePlusiQ61625.

Expressioni

Tissue specificityi

Expressed selectively in cerebellar Purkinje cells where it is localized in dendritic spines.2 Publications

Gene expression databases

BgeeiENSMUSG00000071424.
CleanExiMM_GRID2.
GenevisibleiQ61625. MM.

Interactioni

Subunit structurei

Interacts with AIP1 and AP4M1. Interacts with EML2 (By similarity). Interacts with BECN1, GOPC, GRID2IP, SHANK1 and SHANK2. Interacts with CBLN1 and CBLN2, but not with CBLN4. CBLN1-binding is calcium-independent.By similarity6 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
Cbln1Q9R1718EBI-2794106,EBI-2794140
GopcQ8BH605EBI-2794106,EBI-296357

GO - Molecular functioni

  • PDZ domain binding Source: BHF-UCL
  • scaffold protein binding Source: BHF-UCL

Protein-protein interaction databases

BioGridi200062. 3 interactors.
IntActiQ61625. 37 interactors.
MINTiMINT-126960.
STRINGi10090.ENSMUSP00000093536.

Structurei

3D structure databases

ProteinModelPortaliQ61625.
SMRiQ61625.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni921 – 991Interaction with AP4M1By similarityAdd BLAST71

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi1005 – 1007PDZ-binding3

Domaini

The PDZ-binding motif mediates interaction with GOPC.1 Publication

Sequence similaritiesi

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410ISR9. Eukaryota.
ENOG410YYDD. LUCA.
GeneTreeiENSGT00760000118920.
HOGENOMiHOG000264260.
HOVERGENiHBG051840.
InParanoidiQ61625.
KOiK05207.
OMAiHGNYAFV.
OrthoDBiEOG091G010L.
PhylomeDBiQ61625.
TreeFamiTF352434.

Family and domain databases

InterProiIPR001828. ANF_lig-bd_rcpt.
IPR019594. Glu/Gly-bd.
IPR001508. Iono_rcpt_met.
IPR001320. Iontro_rcpt.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF01094. ANF_receptor. 1 hit.
PF00060. Lig_chan. 1 hit.
PF10613. Lig_chan-Glu_bd. 1 hit.
[Graphical view]
PRINTSiPR00177. NMDARECEPTOR.
SMARTiSM00918. Lig_chan-Glu_bd. 1 hit.
SM00079. PBPe. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q61625-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEVFPLLLFL SFCWSRTWDL ATADSIIHIG AIFDESAKKD DEVFRTAVGD
60 70 80 90 100
LNQNEEILQT EKITFSVTFV DGNNPFQAVQ EACELMNQGI LALVSSIGCT
110 120 130 140 150
SAGSLQSLAD AMHIPHLFIQ RSTAGTPRSG CGLTRSNRND DYTLSVRPPV
160 170 180 190 200
YLNEVILRVV TEYAWQKFII FYDSEYDIRG IQEFLDKVSQ QGMDVALQKV
210 220 230 240 250
ENNINKMITT LFDTMRIEEL NRYRDTLRRA ILVMNPATAK SFISEVVETN
260 270 280 290 300
LVAFDCHWII INEEINDVDV QELVRRSIGR LTIIRQTFPV PQNISQRCFR
310 320 330 340 350
GNHRISSSLC DPKDPFAQNM EISNLYIYDT VLLLANAFHK KLEDRKWHSM
360 370 380 390 400
ASLSCIRKNS KPWQGGRSML ETIKKGGVNG LTGDLEFGEN GGNPNVHFEI
410 420 430 440 450
LGTNYGEELG RGVRKLGCWN PVTGLNGSLT DKKLENNMRG VVLRVVTVLE
460 470 480 490 500
EPFVMVSENV LGKPKKYQGF SIDVLDALSN YLGFNYEIYV APDHKYGSPQ
510 520 530 540 550
EDGTWNGLVG ELVFKRADIG ISALTITPDR ENVVDFTTRY MDYSVGVLLR
560 570 580 590 600
RAEKTVDMFA CLAPFDLSLW ACIAGTVLLV GLLVYLLNWL NPPRLQMGSM
610 620 630 640 650
TSTTLYNSMW FVYGSFVQQG GEVPYTTLAT RMMMGAWWLF ALIVISSYTA
660 670 680 690 700
NLAAFLTITR IESSIQSLQD LSKQTDIPYG TVLDSAVYQH VRMKGLNPFE
710 720 730 740 750
RDSMYSQMWR MINRSNGSEN NVLESQAGIQ KVKYGNYAFV WDAAVLEYVA
760 770 780 790 800
INDPDCSFYT VGNTVADRGY GIALQHGSPY RDVFSQRILE LQQSGDMDIL
810 820 830 840 850
KHKWWPKNGQ CDLYSSVDAK QKGGALDIKS LAGVFCILAA GIVLSCLIAV
860 870 880 890 900
LETWWSRRKG SRVPSKEDDK EIDLEHLHRR VNSLCTDDDS PHKQFSTSSI
910 920 930 940 950
DLTPLDIDTL PTRQALEQIS DFRNTHITTT TFIPEQIQTL SRTLSAKAAS
960 970 980 990 1000
GFAFGSVPEH RTGPFRHRAP NGGFFRSPIK TMSSIPYQPT PTLGLNLGND

PDRGTSI
Length:1,007
Mass (Da):113,082
Last modified:November 1, 1996 - v1
Checksum:iA456166CC782A44B
GO

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural varianti654A → T in Lurcher. 1 Publication1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13266 mRNA. Translation: BAA02524.1.
BC139823 mRNA. Translation: AAI39824.1.
CCDSiCCDS20202.1.
PIRiPN0156.
RefSeqiNP_032193.1. NM_008167.2.
UniGeneiMm.439651.
Mm.447390.

Genome annotation databases

EnsembliENSMUST00000095852; ENSMUSP00000093536; ENSMUSG00000071424.
GeneIDi14804.
KEGGimmu:14804.
UCSCiuc009cdz.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D13266 mRNA. Translation: BAA02524.1.
BC139823 mRNA. Translation: AAI39824.1.
CCDSiCCDS20202.1.
PIRiPN0156.
RefSeqiNP_032193.1. NM_008167.2.
UniGeneiMm.439651.
Mm.447390.

3D structure databases

ProteinModelPortaliQ61625.
SMRiQ61625.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi200062. 3 interactors.
IntActiQ61625. 37 interactors.
MINTiMINT-126960.
STRINGi10090.ENSMUSP00000093536.

Protein family/group databases

TCDBi1.A.10.1.8. the glutamate-gated ion channel (gic) family of neurotransmitter receptors.

PTM databases

iPTMnetiQ61625.
PhosphoSitePlusiQ61625.

Proteomic databases

MaxQBiQ61625.
PaxDbiQ61625.
PeptideAtlasiQ61625.
PRIDEiQ61625.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000095852; ENSMUSP00000093536; ENSMUSG00000071424.
GeneIDi14804.
KEGGimmu:14804.
UCSCiuc009cdz.1. mouse.

Organism-specific databases

CTDi2895.
MGIiMGI:95813. Grid2.

Phylogenomic databases

eggNOGiENOG410ISR9. Eukaryota.
ENOG410YYDD. LUCA.
GeneTreeiENSGT00760000118920.
HOGENOMiHOG000264260.
HOVERGENiHBG051840.
InParanoidiQ61625.
KOiK05207.
OMAiHGNYAFV.
OrthoDBiEOG091G010L.
PhylomeDBiQ61625.
TreeFamiTF352434.

Miscellaneous databases

ChiTaRSiGrid2. mouse.
PROiQ61625.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000071424.
CleanExiMM_GRID2.
GenevisibleiQ61625. MM.

Family and domain databases

InterProiIPR001828. ANF_lig-bd_rcpt.
IPR019594. Glu/Gly-bd.
IPR001508. Iono_rcpt_met.
IPR001320. Iontro_rcpt.
IPR028082. Peripla_BP_I.
[Graphical view]
PfamiPF01094. ANF_receptor. 1 hit.
PF00060. Lig_chan. 1 hit.
PF10613. Lig_chan-Glu_bd. 1 hit.
[Graphical view]
PRINTSiPR00177. NMDARECEPTOR.
SMARTiSM00918. Lig_chan-Glu_bd. 1 hit.
SM00079. PBPe. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiGRID2_MOUSE
AccessioniPrimary (citable) accession number: Q61625
Secondary accession number(s): A4QPG1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 15, 2002
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 157 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.