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Protein

Leukocyte surface antigen CD53

Gene

Cd53

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Required for efficient formation of myofibers in regenerating muscle at the level of cell fusion. May be involved in growth regulation in hematopoietic cells.1 Publication

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Leukocyte surface antigen CD53
Alternative name(s):
Cell surface glycoprotein CD53
CD_antigen: CD53
Gene namesi
Name:Cd53
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 3

Organism-specific databases

MGIiMGI:88341. Cd53.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini2 – 1110CytoplasmicSequence analysis
Transmembranei12 – 3221HelicalSequence analysisAdd
BLAST
Topological domaini33 – 5422ExtracellularSequence analysisAdd
BLAST
Transmembranei55 – 6915HelicalSequence analysisAdd
BLAST
Topological domaini70 – 8011CytoplasmicSequence analysisAdd
BLAST
Transmembranei81 – 10626HelicalSequence analysisAdd
BLAST
Topological domaini107 – 18175ExtracellularSequence analysisAdd
BLAST
Transmembranei182 – 20625HelicalSequence analysisAdd
BLAST
Topological domaini207 – 21913CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • cell-cell junction Source: UniProtKB
  • cell surface Source: Ensembl
  • extracellular exosome Source: MGI
  • immunological synapse Source: MGI
  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 219218Leukocyte surface antigen CD53PRO_0000219213Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi119 – 1191N-linked (GlcNAc...)Sequence analysis
Glycosylationi129 – 1291N-linked (GlcNAc...)Sequence analysis
Glycosylationi148 – 1481N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ61451.
PRIDEiQ61451.

Expressioni

Gene expression databases

BgeeiENSMUSG00000040747.
CleanExiMM_CD53.
ExpressionAtlasiQ61451. baseline and differential.
GenevisibleiQ61451. MM.

Interactioni

Subunit structurei

Interacts with SCIMP.By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000035781.

Structurei

3D structure databases

ProteinModelPortaliQ61451.
SMRiQ61451. Positions 104-179.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the tetraspanin (TM4SF) family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3882. Eukaryota.
ENOG4111IRY. LUCA.
GeneTreeiENSGT00760000118983.
HOGENOMiHOG000230651.
HOVERGENiHBG002324.
InParanoidiQ61451.
KOiK06489.
OMAiAKLWFHS.
OrthoDBiEOG091G0CQO.
PhylomeDBiQ61451.
TreeFamiTF352892.

Family and domain databases

InterProiIPR000301. Tetraspanin.
IPR018499. Tetraspanin/Peripherin.
IPR018503. Tetraspanin_CS.
IPR008952. Tetraspanin_EC2.
[Graphical view]
PfamiPF00335. Tetraspannin. 1 hit.
[Graphical view]
PIRSFiPIRSF002419. Tetraspanin. 1 hit.
PRINTSiPR00259. TMFOUR.
SUPFAMiSSF48652. SSF48652. 1 hit.
PROSITEiPS00421. TM4_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q61451-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGMSSLKLLK YVLFIFNLLF WVCGCCILGF GIYFLVQNTY GVLFRNLPFL
60 70 80 90 100
TLGNILVIVG SIIMVVAFLG CMGSIKENKC LLMSFFVLLL IILLAEVTIA
110 120 130 140 150
ILLFVYEQKL NTLVAEGLND SIQHYHSDNS TMKAWDFIQT QLQCCGVNGS
160 170 180 190 200
SDWTSGPPSS CPSGADVQGC YNKAKSWFHS NFLYIGIITI CVCVIQVLGM
210
SFALTLNCQI DKTSQALGL
Length:219
Mass (Da):24,164
Last modified:January 23, 2007 - v2
Checksum:i7995D2E745A17AC0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X97227 mRNA. Translation: CAA65864.1.
Z16078 Genomic DNA. Translation: CAA78892.1.
BC021310 mRNA. Translation: AAH21310.1.
BC052905 mRNA. Translation: AAH52905.1.
CCDSiCCDS17728.1.
RefSeqiNP_031677.1. NM_007651.3.
UniGeneiMm.316861.

Genome annotation databases

EnsembliENSMUST00000038845; ENSMUSP00000035781; ENSMUSG00000040747.
GeneIDi12508.
KEGGimmu:12508.
UCSCiuc008qwm.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X97227 mRNA. Translation: CAA65864.1.
Z16078 Genomic DNA. Translation: CAA78892.1.
BC021310 mRNA. Translation: AAH21310.1.
BC052905 mRNA. Translation: AAH52905.1.
CCDSiCCDS17728.1.
RefSeqiNP_031677.1. NM_007651.3.
UniGeneiMm.316861.

3D structure databases

ProteinModelPortaliQ61451.
SMRiQ61451. Positions 104-179.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000035781.

Proteomic databases

PaxDbiQ61451.
PRIDEiQ61451.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000038845; ENSMUSP00000035781; ENSMUSG00000040747.
GeneIDi12508.
KEGGimmu:12508.
UCSCiuc008qwm.2. mouse.

Organism-specific databases

CTDi963.
MGIiMGI:88341. Cd53.

Phylogenomic databases

eggNOGiKOG3882. Eukaryota.
ENOG4111IRY. LUCA.
GeneTreeiENSGT00760000118983.
HOGENOMiHOG000230651.
HOVERGENiHBG002324.
InParanoidiQ61451.
KOiK06489.
OMAiAKLWFHS.
OrthoDBiEOG091G0CQO.
PhylomeDBiQ61451.
TreeFamiTF352892.

Miscellaneous databases

PROiQ61451.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000040747.
CleanExiMM_CD53.
ExpressionAtlasiQ61451. baseline and differential.
GenevisibleiQ61451. MM.

Family and domain databases

InterProiIPR000301. Tetraspanin.
IPR018499. Tetraspanin/Peripherin.
IPR018503. Tetraspanin_CS.
IPR008952. Tetraspanin_EC2.
[Graphical view]
PfamiPF00335. Tetraspannin. 1 hit.
[Graphical view]
PIRSFiPIRSF002419. Tetraspanin. 1 hit.
PRINTSiPR00259. TMFOUR.
SUPFAMiSSF48652. SSF48652. 1 hit.
PROSITEiPS00421. TM4_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCD53_MOUSE
AccessioniPrimary (citable) accession number: Q61451
Secondary accession number(s): Q61721
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.