Reviewed,
UniProtKB/Swiss-Prot Q61315 (APC_MOUSE)
Last modified
January 19, 2010.
Version 89.
History...
Clusters with 100%,
90%,
50% identity |
Documents (3) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Adenomatous polyposis coli protein Short name=Protein APC Short name=mAPC | ||
| Gene names |
| ||
| Organism | Mus musculus (Mouse) | ||
| Taxonomic identifier | 10090 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus |
Protein attributes
| Sequence length | 2845 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Tumor suppressor. Promotes rapid degradation of CTNNB1 and participates in Wnt signaling as a negative regulator. APC activity is correlated with its phosphorylation state By similarity. |
| Subunit structure | Forms homooligomers. Interacts with PDZ domains of DLG1 and DLG3. Associates with catenins. Binds axin. Interacts with the N-terminus of ARHGEF4, and the C-terminus of MAPRE1, MAPRE2 and MAPRE3. Found in a complex consisting of ARHGEF4, APC and CTNNB1 By similarity. Interacts with APC2 By similarity. Interacts with DIAPH1 and DIAPH2. Interacts with SCRIB; may mediate targeting to adherens junctions of epithelial cells. Ref.6 Ref.7 |
| Subcellular location | Cell junction › adherens junction By similarity. |
| Tissue specificity | Expressed in liver, spleen, kidney, heart, lung, brain, stomach, intestine, testis and ovary. |
| Post-translational modification | Phosphorylated by GSK3B By similarity. Ubiquitinated, leading to its degradation by the proteasome. Ubiquitination is facilitated by Axin. Deubiquitinated by ZRANB1/TRABID By similarity. |
| Sequence similarities | Belongs to the adenomatous polyposis coli (APC) family. Contains 7 ARM repeats. |
Ontologies
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q61315-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q61315-2) The sequence of this isoform differs from the canonical sequence as follows: 243-276: Missing. | ||||||
| Isoform 3 (identifier: Q61315-3) The sequence of this isoform differs from the canonical sequence as follows: 310-410: Missing. | ||||||
| Isoform 4 (identifier: Q61315-4) The sequence of this isoform differs from the canonical sequence as follows: 243-276: Missing. 310-410: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2845 | 2845 | Adenomatous polyposis coli protein | PRO_0000064628 | |||||
Regions | |||||||||
| Repeat | 451 – 493 | 43 | ARM 1 | ||||||
| Repeat | 503 – 545 | 43 | ARM 2 | ||||||
| Repeat | 546 – 589 | 44 | ARM 3 | ||||||
| Repeat | 590 – 636 | 47 | ARM 4 | ||||||
| Repeat | 637 – 681 | 45 | ARM 5 | ||||||
| Repeat | 682 – 723 | 42 | ARM 6 | ||||||
| Repeat | 724 – 765 | 42 | ARM 7 | ||||||
| Region | 1864 – 1891 | 28 | Highly charged | ||||||
| Coiled coil | 1 – 61 | 61 | Potential | ||||||
| Coiled coil | 125 – 245 | 121 | Potential | ||||||
| Motif | 2843 – 2845 | 3 | PDZ-binding By similarity | ||||||
| Compositional bias | 1 – 728 | 728 | Leu-rich | ||||||
| Compositional bias | 739 – 2834 | 2096 | Ser-rich | ||||||
| Compositional bias | 1130 – 1156 | 27 | Asp/Glu-rich (acidic) | ||||||
| Compositional bias | 1556 – 1575 | 20 | Asp/Glu-rich (acidic) | ||||||
Amino acid modifications | |||||||||
| Modified residue | 778 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 985 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1036 | 1 | Phosphoserine Ref.9 | ||||||
| Modified residue | 1040 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1179 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1359 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1370 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 1437 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 1557 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1695 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 1859 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1861 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1862 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2087 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2092 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2095 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2125 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2143 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2151 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 2260 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2270 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2283 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2398 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2464 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2469 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2473 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2533 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2535 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2671 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2674 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 2676 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 2679 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 2713 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 2791 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2837 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2839 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2840 | 1 | Phosphotyrosine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 243 – 276 | 34 | Missing in isoform 2 and isoform 4. | VSP_004116 | |||||
| Alternative sequence | 310 – 410 | 101 | Missing in isoform 3 and isoform 4. | VSP_004117 | |||||
| Natural variant | 120 | 1 | T → A in strain: CAST/Ei. | ||||||
| Natural variant | 493 | 1 | V → I in strain: CAST/Ei. | ||||||
| Natural variant | 797 | 1 | Y → F in strain: CAST/Ei. | ||||||
| Natural variant | 1330 | 1 | A → T in strain: CAST/Ei. | ||||||
| Natural variant | 1618 | 1 | A → S in strain: CAST/Ei. | ||||||
| Natural variant | 2294 | 1 | G → A in strain: CAST/Ei. | ||||||
| Natural variant | 2496 | 1 | H → Q in strain: CAST/Ei. | ||||||
| Natural variant | 2523 | 1 | T → A in strain: CAST/Ei. | ||||||
| Natural variant | 2813 | 1 | T → S in strain: CAST/Ei. | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Multiple intestinal neoplasia caused by a mutation in the murine homolog of the APC gene." Su L.-K., Kinzler K.W., Vogelstein B., Preisinger A.C., Moser A.R., Luongo C., Gould K.A., Dove W.F. Science 256:668-670(1992) [PubMed: 1350108] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), VARIANTS. Strain: C57BL/6J and CAST/Ei. Tissue: Brain. |
| [2] | Erratum Su L.-K., Kinzler K.W., Vogelstein B., Preisinger A.C., Moser A.R., Luongo C., Gould K.A., Dove W.F. Science 256:1114-1114(1992) |
| [3] | "The murine APC gene: alternative splicing of 5' untranslated region segments." Dicker F., Lambertz S., Reitmair A., Ballhausen W.G. Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-45. Strain: BALB/c. Tissue: Liver. |
| [4] | Lubec G., Sunyer B., Chen W.-Q. Submitted (JAN-2009) to UniProtKB Cited for: PROTEIN SEQUENCE OF 1795-1810, MASS SPECTROMETRY. Strain: OF1. Tissue: Hippocampus. |
| [5] | "APC gene messenger RNA: novel isoforms that lack exon 7." Oshima M., Sugiyama H., Kitagawa K., Taketo M. Cancer Res. 53:5589-5591(1993) [PubMed: 8242607] [Abstract] Cited for: ALTERNATIVE SPLICING. |
| [6] | "EB1 and APC bind to mDia to stabilize microtubules downstream of Rho and promote cell migration." Wen Y., Eng C.H., Schmoranzer J., Cabrera-Poch N., Morris E.J.S., Chen M., Wallar B.J., Alberts A.S., Gundersen G.G. Nat. Cell Biol. 6:820-830(2004) [PubMed: 15311282] [Abstract] Cited for: INTERACTION WITH DIAPH1; DIAPH2 AND MAPRE1. |
| [7] | "Human scribble, a novel tumor suppressor identified as a target of high-risk HPV E6 for ubiquitin-mediated degradation, interacts with adenomatous polyposis coli." Takizawa S., Nagasaka K., Nakagawa S., Yano T., Nakagawa K., Yasugi T., Takeuchi T., Kanda T., Huibregtse J.M., Akiyama T., Taketani Y. Genes Cells 11:453-464(2006) [PubMed: 16611247] [Abstract] Cited for: INTERACTION WITH SCRIB. |
| [8] | "Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations." Munton R.P., Tweedie-Cullen R., Livingstone-Zatchej M., Weinandy F., Waidelich M., Longo D., Gehrig P., Potthast F., Rutishauser D., Gerrits B., Panse C., Schlapbach R., Mansuy I.M. Mol. Cell. Proteomics 6:283-293(2007) [PubMed: 17114649] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1370; SER-2674 AND SER-2713, MASS SPECTROMETRY. Tissue: Brain cortex. |
| [9] | "Large-scale phosphorylation analysis of mouse liver." Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007) [PubMed: 17242355] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1036, MASS SPECTROMETRY. Tissue: Liver. |
| [10] | "Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry." Zanivan S., Gnad F., Wickstroem S.A., Geiger T., Macek B., Cox J., Faessler R., Mann M. J. Proteome Res. 7:5314-5326(2008) [PubMed: 18973353] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1557, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M88127 mRNA. Translation: AAB59632.1. U02937 Unassigned DNA. Translation: AAA03443.1. | ||||||||||||
| IPI | IPI00119913. IPI00229891. IPI00229894. IPI00468234. | ||||||||||||
| PIR | I49505. | ||||||||||||
| UniGene | Mm.384171 | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| SMR | Q61315. Positions 2-55, 128-237, 1467-1528. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| STRING | Q61315. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q61315. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | Q61315. | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENSMUST00000079362; ENSMUSP00000078337; ENSMUSG00000005871; Mus musculus. [Genome view] ENSMUST00000115781; ENSMUSP00000111447; ENSMUSG00000005871; Mus musculus. [Genome view] | ||||||||||||
| UCSC | uc008eke.1. mouse. | ||||||||||||
Organism-specific databases | |||||||||||||
| MGI | MGI:88039. Apc. | ||||||||||||
Phylogenomic databases | |||||||||||||
| HOGENOM | HBG715475. | ||||||||||||
| HOVERGEN | Q61315. | ||||||||||||
| InParanoid | Q61315. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q61315. | ||||||||||||
| Bgee | Q61315. | ||||||||||||
| CleanEx | MM_APC. | ||||||||||||
| Genevestigator | Q61315. | ||||||||||||
| GermOnline | ENSMUSG00000005871. Mus musculus. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR009240. APC_15aa. IPR009234. APC_basic. IPR009223. APC_crr. IPR011989. ARM-like. IPR016024. ARM-type_fold. IPR000225. Armadillo. IPR009232. EB1_bd. IPR009224. SAMP. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:1.25.10.10. ARM-like. 1 hit. | ||||||||||||
| Pfam | PF05972. APC_15aa. 4 hits. PF05956. APC_basic. 1 hit. PF05923. APC_crr. 7 hits. PF00514. Arm. 3 hits. PF05937. EB1_binding. 1 hit. PF05924. SAMP. 3 hits. [Graphical view] | ||||||||||||
| SMART | SM00185. ARM. 6 hits. [Graphical view] | ||||||||||||
| PROSITE | PS50176. ARM_REPEAT. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other Resources | |||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | APC_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q61315 Secondary accession number(s): Q62044 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


