Q61315 (APC_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 119.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Adenomatous polyposis coli protein Short name=Protein APC Short name=mAPC | ||
| Gene names |
| ||
| Organism | Mus musculus (Mouse) [Reference proteome] | ||
| Taxonomic identifier | 10090 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 2845 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Tumor suppressor. Promotes rapid degradation of CTNNB1 and participates in Wnt signaling as a negative regulator. APC activity is correlated with its phosphorylation state. Activates the GEF activity of SPATA13 and ARHGEF4. Plays a role in hepatocyte growth factor (HGF)-induced cell migration By similarity. Required for MMP9 up-regulation via the JNK signaling pathway in colorectal tumor cells. Acts as a mediator of ERBB2-dependent stabilization of microtubules at the cell cortex. It is required for the localization of MACF1 to the cell membrane and this localization of MACF1 is critical for its function in microtubule stabilization By similarity. Ref.11 |
| Subunit structure | Forms homooligomers and heterooligomers with APC2. Interacts with PDZ domains of DLG1 and DLG3. Associates with catenins. Binds axin. Interacts with MAPRE2 and MAPRE3 (via C-terminus). Found in a complex consisting of ARHGEF4, APC and CTNNB1. Interacts with ARHGEF4 (via N-terminus) By similarity. Interacts with MAPRE1 (via C-terminus); probably required for APC targeting to the growing microtubule plus ends. Interacts with DIAPH1 and DIAPH2. Interacts with SCRIB; may mediate targeting to adherens junctions of epithelial cells. Interacts with SPATA13 (via N-terminus and SH3 domain). Interacts with ASAP1 (via SH3 domain) By similarity. Found in a complex composed of MACF1, APC, AXIN1, CTNNB1 and GSK3B. Interacts at the cell membrane with AMER1 and AMER2 (via ARM repeats) By similarity. Ref.6 Ref.7 |
| Subcellular location | Cell junction › adherens junction By similarity. Cytoplasm › cytoskeleton By similarity. Cell projection › lamellipodium By similarity. Cell projection › ruffle membrane By similarity. Cytoplasm By similarity. Cell membrane By similarity. Note: Associated with the microtubule network at the growing distal tip of microtubules. Accumulates in the lamellipodium and ruffle membrane in response to hepatocyte growth factor (HGF) treatment. The MEMO1-RHOA-DIAPH1 signaling pathway controls localization of the phosophorylated form to the cell membrane By similarity. |
| Tissue specificity | Expressed in liver, spleen, kidney, heart, lung, brain, stomach, intestine, testis and ovary. |
| Domain | The microtubule tip localization signal (MtLS) motif; mediates interaction with MAPRE1 and targeting to the growing microtubule plus ends By similarity. |
| Post-translational modification | Phosphorylated by GSK3B By similarity. Ubiquitinated, leading to its degradation by the proteasome. Ubiquitination is facilitated by Axin. Deubiquitinated by ZRANB1/TRABID By similarity. |
| Sequence similarities | Belongs to the adenomatous polyposis coli (APC) family. Contains 7 ARM repeats. |
Ontologies
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q61315-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q61315-2) The sequence of this isoform differs from the canonical sequence as follows: 243-276: Missing. | ||||||
| Isoform 3 (identifier: Q61315-3) The sequence of this isoform differs from the canonical sequence as follows: 310-410: Missing. | ||||||
| Isoform 4 (identifier: Q61315-4) The sequence of this isoform differs from the canonical sequence as follows: 243-276: Missing. 310-410: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2845 | 2845 | Adenomatous polyposis coli protein | PRO_0000064628 | |||||
Regions | |||||||||
| Repeat | 451 – 493 | 43 | ARM 1 | ||||||
| Repeat | 503 – 545 | 43 | ARM 2 | ||||||
| Repeat | 546 – 589 | 44 | ARM 3 | ||||||
| Repeat | 590 – 636 | 47 | ARM 4 | ||||||
| Repeat | 637 – 681 | 45 | ARM 5 | ||||||
| Repeat | 682 – 723 | 42 | ARM 6 | ||||||
| Repeat | 724 – 765 | 42 | ARM 7 | ||||||
| Region | 1864 – 1891 | 28 | Highly charged | ||||||
| Coiled coil | 1 – 61 | 61 | Potential | ||||||
| Coiled coil | 125 – 245 | 121 | Potential | ||||||
| Motif | 2805 – 2808 | 4 | Microtubule tip localization signal | ||||||
| Motif | 2843 – 2845 | 3 | PDZ-binding By similarity | ||||||
| Compositional bias | 1 – 728 | 728 | Leu-rich | ||||||
| Compositional bias | 739 – 2834 | 2096 | Ser-rich | ||||||
| Compositional bias | 1130 – 1156 | 27 | Asp/Glu-rich (acidic) | ||||||
| Compositional bias | 1556 – 1575 | 20 | Asp/Glu-rich (acidic) | ||||||
Amino acid modifications | |||||||||
| Modified residue | 742 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 778 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1036 | 1 | Phosphoserine Ref.9 | ||||||
| Modified residue | 1040 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1179 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1359 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1370 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 1557 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1695 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 1859 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1861 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1862 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2151 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 2260 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2270 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2283 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2473 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2535 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2671 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 2674 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 2679 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 2713 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 2791 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 243 – 276 | 34 | Missing in isoform 2 and isoform 4. | VSP_004116 | |||||
| Alternative sequence | 310 – 410 | 101 | Missing in isoform 3 and isoform 4. | VSP_004117 | |||||
| Natural variant | 120 | 1 | T → A in strain: CAST/Ei. | ||||||
| Natural variant | 493 | 1 | V → I in strain: CAST/Ei. | ||||||
| Natural variant | 797 | 1 | Y → F in strain: CAST/Ei. | ||||||
| Natural variant | 1330 | 1 | A → T in strain: CAST/Ei. | ||||||
| Natural variant | 1618 | 1 | A → S in strain: CAST/Ei. | ||||||
| Natural variant | 2294 | 1 | G → A in strain: CAST/Ei. | ||||||
| Natural variant | 2496 | 1 | H → Q in strain: CAST/Ei. | ||||||
| Natural variant | 2523 | 1 | T → A in strain: CAST/Ei. | ||||||
| Natural variant | 2813 | 1 | T → S in strain: CAST/Ei. | ||||||
Sequences
| ||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Multiple intestinal neoplasia caused by a mutation in the murine homolog of the APC gene." Su L.-K., Kinzler K.W., Vogelstein B., Preisinger A.C., Moser A.R., Luongo C., Gould K.A., Dove W.F. Science 256:668-670(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), VARIANTS. Strain: C57BL/6J and CAST/Ei. Tissue: Brain. |
| [2] | Erratum Su L.-K., Kinzler K.W., Vogelstein B., Preisinger A.C., Moser A.R., Luongo C., Gould K.A., Dove W.F. Science 256:1114-1114(1992) |
| [3] | "The murine APC gene: alternative splicing of 5' untranslated region segments." Dicker F., Lambertz S., Reitmair A., Ballhausen W.G. Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-45. Strain: BALB/c. Tissue: Liver. |
| [4] | Lubec G., Sunyer B., Chen W.-Q. Submitted (JAN-2009) to UniProtKB Cited for: PROTEIN SEQUENCE OF 1795-1810, MASS SPECTROMETRY. Strain: OF1. Tissue: Hippocampus. |
| [5] | "APC gene messenger RNA: novel isoforms that lack exon 7." Oshima M., Sugiyama H., Kitagawa K., Taketo M. Cancer Res. 53:5589-5591(1993) [PubMed] [Europe PMC] [Abstract] Cited for: ALTERNATIVE SPLICING. |
| [6] | "EB1 and APC bind to mDia to stabilize microtubules downstream of Rho and promote cell migration." Wen Y., Eng C.H., Schmoranzer J., Cabrera-Poch N., Morris E.J.S., Chen M., Wallar B.J., Alberts A.S., Gundersen G.G. Nat. Cell Biol. 6:820-830(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH DIAPH1; DIAPH2 AND MAPRE1. |
| [7] | "Human scribble, a novel tumor suppressor identified as a target of high-risk HPV E6 for ubiquitin-mediated degradation, interacts with adenomatous polyposis coli." Takizawa S., Nagasaka K., Nakagawa S., Yano T., Nakagawa K., Yasugi T., Takeuchi T., Kanda T., Huibregtse J.M., Akiyama T., Taketani Y. Genes Cells 11:453-464(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SCRIB. |
| [8] | "Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations." Munton R.P., Tweedie-Cullen R., Livingstone-Zatchej M., Weinandy F., Waidelich M., Longo D., Gehrig P., Potthast F., Rutishauser D., Gerrits B., Panse C., Schlapbach R., Mansuy I.M. Mol. Cell. Proteomics 6:283-293(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1370; SER-2674 AND SER-2713, MASS SPECTROMETRY. Tissue: Brain cortex. |
| [9] | "Large-scale phosphorylation analysis of mouse liver." Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1036, MASS SPECTROMETRY. Tissue: Liver. |
| [10] | "Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry." Zanivan S., Gnad F., Wickstroem S.A., Geiger T., Macek B., Cox J., Faessler R., Mann M. J. Proteome Res. 7:5314-5326(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1557, MASS SPECTROMETRY. Tissue: Melanoma. |
| [11] | "The adenomatous polyposis coli-associated exchange factors Asef and Asef2 are required for adenoma formation in Apc(Min/+)mice." Kawasaki Y., Tsuji S., Muroya K., Furukawa S., Shibata Y., Okuno M., Ohwada S., Akiyama T. EMBO Rep. 10:1355-1362(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | M88127 mRNA. Translation: AAB59632.1. U02937 Unassigned DNA. Translation: AAA03443.1. | ||||||||||||
| IPI | IPI00119913. IPI00229891. IPI00229894. IPI00468234. | ||||||||||||
| PIR | I49505. | ||||||||||||
| UniGene | Mm.384171. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q61315. | ||||||||||||
| SMR | Q61315. Positions 2-55, 128-237, 324-734, 1485-1527. | ||||||||||||
| ModBase | Search... | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q61315. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q61315. | ||||||||||||
| PRIDE | Q61315. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Organism-specific databases | |||||||||||||
| MGI | MGI:88039. Apc. | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG259696. | ||||||||||||
| HOGENOM | HOG000033986. | ||||||||||||
| HOVERGEN | HBG004264. | ||||||||||||
| InParanoid | Q61315. | ||||||||||||
| OrthoDB | EOG4D26NZ. | ||||||||||||
Gene expression databases | |||||||||||||
| CleanEx | MM_APC. | ||||||||||||
| Genevestigator | Q61315. | ||||||||||||
| GermOnline | ENSMUSG00000005871. Mus musculus. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.25.10.10. 2 hits. | ||||||||||||
| InterPro | IPR026836. APC. IPR009240. APC_15aa_rpt. IPR009234. APC_basic_dom. IPR009223. APC_Cys-rich_rpt. IPR026831. APC_dom. IPR026818. Apc_fam. IPR011989. ARM-like. IPR016024. ARM-type_fold. IPR000225. Armadillo. IPR009232. EB1-bd. IPR009224. SAMP. [Graphical view] | ||||||||||||
| PANTHER | PTHR12607. PTHR12607. 1 hit. PTHR12607:SF2. PTHR12607:SF2. 1 hit. | ||||||||||||
| Pfam | PF05972. APC_15aa. 4 hits. PF05956. APC_basic. 1 hit. PF05923. APC_crr. 7 hits. PF00514. Arm. 3 hits. PF05937. EB1_binding. 1 hit. PF05924. SAMP. 3 hits. PF11414. Suppressor_APC. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00185. ARM. 6 hits. [Graphical view] | ||||||||||||
| SUPFAM | SSF48371. ARM-type_fold. 1 hit. | ||||||||||||
| PROSITE | PS50176. ARM_REPEAT. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | APC. mouse. | ||||||||||||
| EvolutionaryTrace | Q61315. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | APC_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q61315 Secondary accession number(s): Q62044 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
