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Q60DY1

- BGL21_ORYSJ

UniProt

Q60DY1 - BGL21_ORYSJ

Protein

Beta-glucosidase 21

Gene

BGLU21

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 2 (15 Dec 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei47 – 471SubstrateBy similarity
    Binding sitei147 – 1471SubstrateBy similarity
    Active sitei193 – 1931Proton donorBy similarity
    Binding sitei336 – 3361SubstrateBy similarity
    Active sitei406 – 4061NucleophileBy similarity
    Binding sitei448 – 4481SubstrateBy similarity

    GO - Molecular functioni

    1. beta-glucosidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Protein family/group databases

    CAZyiGH1. Glycoside Hydrolase Family 1.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-glucosidase 21 (EC:3.2.1.21)
    Short name:
    Os5bglu21
    Gene namesi
    Name:BGLU21
    Ordered Locus Names:Os05g0366000, LOC_Os05g30300
    ORF Names:OsJ_18259, OSJNBa0090H02.7
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 5

    Organism-specific databases

    GrameneiQ60DY1.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525Sequence AnalysisAdd
    BLAST
    Chaini26 – 514489Beta-glucosidase 21PRO_0000390338Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Disulfide bondi212 ↔ 220By similarity
    Glycosylationi219 – 2191N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi224 – 2241N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi407 – 4071N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi494 – 4941N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Disulfide bond, Glycoprotein

    Structurei

    3D structure databases

    ProteinModelPortaliQ60DY1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni455 – 4562Substrate bindingBy similarity

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 1 family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG2723.
    KOiK01188.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR001360. Glyco_hydro_1.
    IPR018120. Glyco_hydro_1_AS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10353. PTHR10353. 1 hit.
    PfamiPF00232. Glyco_hydro_1. 1 hit.
    [Graphical view]
    PRINTSiPR00131. GLHYDRLASE1.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    PROSITEiPS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q60DY1-1 [UniParc]FASTAAdd to Basket

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    MERPLHLLLV FLSSPWLLLL QGVSSLQFTR DDFPHDFAFG AGTSAYQYEG    50
    GAAEDGRTPS IWDTYTHSGR HPEDETGDVA SDGYHKYKED VKLMSEIGLE 100
    AYRFTISWSR LIPSGRGAVN LKALQFYNSM INELVKAGIQ IHVVMYHMDL 150
    PQSLQDEYGG WISPKIVDDF TAYADVCFRE FGDRVVHWTT VLEPNAMAQA 200
    GYDMGILPPN RCSYPFGSNC TAGNSSVEPY LFIHHSLLAH ASAVRLYREK 250
    YKVAQKGIIG INIYSMWFYP FTDSAEEIGA TERAKKFIYG WILHPLVFGD 300
    YPDTMKKAAG SRLPIFSNHE SEMVTNSFDF IGLNHYSSVY TSNNNNVVKA 350
    PLQDLTADVA TLFRVTKNDT PTPVFVPGTI VDPRGLEHAL KYIREKYGNL 400
    PIYIQENGSG SSSETLDDVE RINYLAKYIA ATLKAIRSGA NVKGYSMWSF 450
    VDLYELFGGY STWHFGLVAV DFDSEKRRRQ PRRSASWYSE FLKNNSVIRV 500
    EEDGFVSAAS HAQL 514
    Length:514
    Mass (Da):57,939
    Last modified:December 15, 2009 - v2
    Checksum:iEF6595DD53C4E946
    GO

    Sequence cautioni

    The sequence AAV31355.1 differs from that shown. Reason: Erroneous gene model prediction.
    The sequence BAF17243.2 differs from that shown. Reason: Erroneous gene model prediction.
    The sequence EEE63446.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC137618 Genomic DNA. Translation: AAV31355.1. Sequence problems.
    AP008211 Genomic DNA. Translation: BAF17243.2. Sequence problems.
    CM000142 Genomic DNA. Translation: EEE63446.1. Sequence problems.
    RefSeqiNP_001055329.2. NM_001061864.2.
    UniGeneiOs.80244.

    Genome annotation databases

    EnsemblPlantsiOS05T0366000-00; OS05T0366000-00; OS05G0366000.
    GeneIDi4338558.
    KEGGiosa:4338558.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC137618 Genomic DNA. Translation: AAV31355.1 . Sequence problems.
    AP008211 Genomic DNA. Translation: BAF17243.2 . Sequence problems.
    CM000142 Genomic DNA. Translation: EEE63446.1 . Sequence problems.
    RefSeqi NP_001055329.2. NM_001061864.2.
    UniGenei Os.80244.

    3D structure databases

    ProteinModelPortali Q60DY1.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH1. Glycoside Hydrolase Family 1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS05T0366000-00 ; OS05T0366000-00 ; OS05G0366000 .
    GeneIDi 4338558.
    KEGGi osa:4338558.

    Organism-specific databases

    Gramenei Q60DY1.

    Phylogenomic databases

    eggNOGi COG2723.
    KOi K01188.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR001360. Glyco_hydro_1.
    IPR018120. Glyco_hydro_1_AS.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10353. PTHR10353. 1 hit.
    Pfami PF00232. Glyco_hydro_1. 1 hit.
    [Graphical view ]
    PRINTSi PR00131. GLHYDRLASE1.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    PROSITEi PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase."
      Opassiri R., Pomthong B., Onkoksoong T., Akiyama T., Esen A., Ketudat Cairns J.R.
      BMC Plant Biol. 6:33-33(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiBGL21_ORYSJ
    AccessioniPrimary (citable) accession number: Q60DY1
    Secondary accession number(s): Q0DIT0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 2009
    Last sequence update: December 15, 2009
    Last modified: October 1, 2014
    This is version 64 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3