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Q60DY1 (BGL21_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Beta-glucosidase 21

Short name=Os5bglu21
EC=3.2.1.21
Gene names
Name:BGLU21
Ordered Locus Names:Os05g0366000, LOC_Os05g30300
ORF Names:OsJ_18259, OSJNBa0090H02.7
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length514 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal, non-reducing beta-D-glucosyl residues with release of beta-D-glucose.

Sequence similarities

Belongs to the glycosyl hydrolase 1 family.

Sequence caution

The sequence AAV31355.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence BAF17243.2 differs from that shown. Reason: Erroneous gene model prediction.

The sequence EEE63446.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   DomainSignal
   Molecular functionGlycosidase
Hydrolase
   PTMDisulfide bond
Glycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionbeta-glucosidase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 514489Beta-glucosidase 21
PRO_0000390338

Regions

Region455 – 4562Substrate binding By similarity

Sites

Active site1931Proton donor By similarity
Active site4061Nucleophile By similarity
Binding site471Substrate By similarity
Binding site1471Substrate By similarity
Binding site3361Substrate By similarity
Binding site4481Substrate By similarity

Amino acid modifications

Glycosylation2191N-linked (GlcNAc...) Potential
Glycosylation2241N-linked (GlcNAc...) Potential
Glycosylation4071N-linked (GlcNAc...) Potential
Glycosylation4941N-linked (GlcNAc...) Potential
Disulfide bond212 ↔ 220 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q60DY1 [UniParc].

Last modified December 15, 2009. Version 2.
Checksum: EF6595DD53C4E946

FASTA51457,939
        10         20         30         40         50         60 
MERPLHLLLV FLSSPWLLLL QGVSSLQFTR DDFPHDFAFG AGTSAYQYEG GAAEDGRTPS 

        70         80         90        100        110        120 
IWDTYTHSGR HPEDETGDVA SDGYHKYKED VKLMSEIGLE AYRFTISWSR LIPSGRGAVN 

       130        140        150        160        170        180 
LKALQFYNSM INELVKAGIQ IHVVMYHMDL PQSLQDEYGG WISPKIVDDF TAYADVCFRE 

       190        200        210        220        230        240 
FGDRVVHWTT VLEPNAMAQA GYDMGILPPN RCSYPFGSNC TAGNSSVEPY LFIHHSLLAH 

       250        260        270        280        290        300 
ASAVRLYREK YKVAQKGIIG INIYSMWFYP FTDSAEEIGA TERAKKFIYG WILHPLVFGD 

       310        320        330        340        350        360 
YPDTMKKAAG SRLPIFSNHE SEMVTNSFDF IGLNHYSSVY TSNNNNVVKA PLQDLTADVA 

       370        380        390        400        410        420 
TLFRVTKNDT PTPVFVPGTI VDPRGLEHAL KYIREKYGNL PIYIQENGSG SSSETLDDVE 

       430        440        450        460        470        480 
RINYLAKYIA ATLKAIRSGA NVKGYSMWSF VDLYELFGGY STWHFGLVAV DFDSEKRRRQ 

       490        500        510 
PRRSASWYSE FLKNNSVIRV EEDGFVSAAS HAQL 

« Hide

References

« Hide 'large scale' references
[1]"A fine physical map of the rice chromosome 5."
Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.
Mol. Genet. Genomics 274:337-345(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"The genomes of Oryza sativa: a history of duplications."
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. expand/collapse author list , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[5]"Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase."
Opassiri R., Pomthong B., Onkoksoong T., Akiyama T., Esen A., Ketudat Cairns J.R.
BMC Plant Biol. 6:33-33(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC137618 Genomic DNA. Translation: AAV31355.1. Sequence problems.
AP008211 Genomic DNA. Translation: BAF17243.2. Sequence problems.
CM000142 Genomic DNA. Translation: EEE63446.1. Sequence problems.
RefSeqNP_001055329.2. NM_001061864.2.
UniGeneOs.80244.

3D structure databases

ProteinModelPortalQ60DY1.
ModBaseSearch...
MobiDBSearch...

Protein family/group databases

CAZyGH1. Glycoside Hydrolase Family 1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS05T0366000-00; OS05T0366000-00; OS05G0366000.
GeneID4338558.
KEGGosa:4338558.

Organism-specific databases

GrameneQ60DY1.

Phylogenomic databases

eggNOGCOG2723.
KOK01188.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10353. PTHR10353. 1 hit.
PfamPF00232. Glyco_hydro_1. 1 hit.
[Graphical view]
PRINTSPR00131. GLHYDRLASE1.
SUPFAMSSF51445. SSF51445. 1 hit.
PROSITEPS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameBGL21_ORYSJ
AccessionPrimary (citable) accession number: Q60DY1
Secondary accession number(s): Q0DIT0
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 2009
Last sequence update: December 15, 2009
Last modified: February 19, 2014
This is version 63 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries