Glycogen debranching enzyme GlgX - Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Glycogen debranching enzyme GlgX EMBL AAU90465.1
EC=3.2.1.- EMBL AAU90465.1

Gene names

Name:	glgX EMBL AAU90465.1
Ordered Locus Names:	MCA0296

Organism

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [Complete proteome] [HAMAP] EMBL AAU90465.1

Taxonomic identifier

243233 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Methylococcales › Methylococcaceae › Methylococcus

Protein attributes

Sequence length	724 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Glycosidase EMBL AAU90465.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycogen catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro glycogen debranching enzyme activity Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q60C15 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: 7B3C3B8B59A912A7
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FASTA

724

80,902

        10         20         30         40         50         60 
MRKVDDTLPA RRVFLGVLRI GPGRGPAAMT VPAKFDYSTG SPLPLGVHFQ GTDANFALFS 

        70         80         90        100        110        120 
RHGSRVRLLL FADPSHTRPH QVIDLDPHHH RTGDIWHVAV HGAHRGLAYA FQVDGPHEPH 

       130        140        150        160        170        180 
LGHRFDPQAV LLDPYATALV TPEHWEFSGA AVGGPEGVVA KALVTADHFD WGHDRPLKHH 

       190        200        210        220        230        240 
WSELVIYEAH VRGLSIHPSS AVRHPGTYLG VIDKIPYFKR LGITALELMP LQAFNPYEVT 

       250        260        270        280        290        300 
RYNPVTGERL RNYWGYNTIA FQAPHAGYGT GAYPGCQVEE FKRMVKALHE ADIEVLLDVV 

       310        320        330        340        350        360 
FNHTAEGDET GPILNFRGLD NSIYYLLEED RRHYRNYSGC GNTVNCNHPV VRSYILDCLR 

       370        380        390        400        410        420 
YWVVEMHVDG FRFDLASILG RDRNGHLVPN PPLLELIAED PILRDVKLIA EAWDAGGAYL 

       430        440        450        460        470        480 
VGRFPGERWC EWNGVYRDDV RRYWRGDPGM AGAFASRLCG SADIYEHSGK APVNSINFVT 

       490        500        510        520        530        540 
CHDGFTLNDL VSYACKHNSA NGEDNRDGSD HNFSANYGCE GPTGDHGINA VRRRQMKNLM 

       550        560        570        580        590        600 
ASLLLSRGVP MILGGDEFCR TQRGNNNAYC QDNEISWFDW RLLDENRSFF EFVRKMIAFR 

       610        620        630        640        650        660 
ARHPVLSREQ FYRPEDILWF SPAGGQPDWQ ADAALGCCIR AVGGEEQPLC LLFNPTAEGL 

       670        680        690        700        710        720 
CFRLPDTLRG GVWIKAVDTA VESPCDICEL EGGSPLPDQR RLFLPDRSLV VLVEGAATAA 


AARA

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References

[1]

"Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)."
Ward N.L., Larsen O., Sakwa J., Bruseth L., Khouri H.M., Durkin A.S., Dimitrov G., Jiang L., Scanlan D., Kang K.H., Lewis M.R., Nelson K.E., Methe B.A., Wu M., Heidelberg J.F., Paulsen I.T., Fouts D.E., Ravel J.

Eisen J.A.
PLoS Biol. 2:1616-1628(2004) [PubMed: 15383840] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33009 / NCIMB 11132 / Bath.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE017282 Genomic DNA. Translation: AAU90465.1.
RefSeq	YP_112830.1. NC_002977.6.
3D structure databases
ProteinModelPortal	Q60C15.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3102055.
GenomeReviews	Gene locus MCA0296 in contig AE017282_GR.
KEGG	mca:MCA0296.
NMPDR	fig\|243233.4.peg.668.
PATRIC	22604333. VBIMetCap22254_0308.
TIGR	MCA0296.
Phylogenomic databases
HOGENOM	HBG350946.
OMA	VDGPHEP.
ProtClustDB	CLSK2765630.
Family and domain databases
InterPro	IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR011837. Glycogen_debranch_debranch. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
KO	K02438.
PANTHER	PTHR10357. Alpha_amylase. 1 hit. PTHR10357:SF74. PTHR10357:SF74. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF02922. CBM_48. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 1 hit.
TIGRFAMs	TIGR02100. GlgX_debranch. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q60C15_METCA

Accession

Primary (citable) accession number: Q60C15

Entry history

Integrated into UniProtKB/TrEMBL:	November 23, 2004
Last sequence update:	November 23, 2004
Last modified:	December 14, 2011
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Preferred order of sections

Names and origin

Protein attributes

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry information