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Protein
Submitted name:

MYB-1a

Gene

Ybx1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
MYB-1aImported
Gene namesi
Name:Ybx1Imported
Synonyms:Nsep1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:99146. Ybx1.

PTM / Processingi

Proteomic databases

PaxDbiQ60950.
PeptideAtlasiQ60950.
PRIDEiQ60950.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000078589.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini58 – 126CSPInterPro annotationAdd BLAST69

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
HOVERGENiHBG008757.

Family and domain databases

CDDicd04458. CSP_CDS. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q60950-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSEAETQQP PAAPAAALSA ADTKPGSTGS GAGSGGPGGL TSAAPAGGDK
60 70 80 90 100
KVIATKVLGT VKWFNVRNGY GFINRNDTKE DVFVHQTAIK KNNPRKYLRS
110 120 130 140 150
VGDGETVEFD VVEGEKGAEA ANVTGPGGVP VQGSKYAADR NHYRRYPRRR
160 170 180 190 200
GPPRNYQQNY QNSESGEKNK ESKSAPEGQA QQRRPYRRRR FPPYYMRRPY
210 220 230 240 250
ERRPQYSNPP VQGEVMENAD NQGAGEQGRP VRQNMYRGYR PRFRRGPPRQ
260 270 280 290 300
RQPREDDNEE DKENQGDETQ GQQPPQRQYR RNPNYRRRRP ENHKSKDGKE
310 320
TKATHPPTEN SSAPEAEQGG AE
Length:322
Mass (Da):36,007
Last modified:November 1, 1996 - v1
Checksum:iE4E96AF7924544DA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U33196 mRNA. Translation: AAA75475.1.
UniGeneiMm.258204.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U33196 mRNA. Translation: AAA75475.1.
UniGeneiMm.258204.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000078589.

Proteomic databases

PaxDbiQ60950.
PeptideAtlasiQ60950.
PRIDEiQ60950.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:99146. Ybx1.

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
HOVERGENiHBG008757.

Miscellaneous databases

ChiTaRSiYbx1. mouse.
SOURCEiSearch...

Family and domain databases

CDDicd04458. CSP_CDS. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ60950_MOUSE
AccessioniPrimary (citable) accession number: Q60950
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: October 5, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.